Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20240 447 / 1e-157 Mitochondrial substrate carrier family protein (.1) AT4G32400 200 / 2e-60 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G51870 103 / 1e-24 Mitochondrial substrate carrier family protein (.1) AT4G01100 102 / 5e-24 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 102 / 1e-23 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT3G21390 100 / 1e-23 Mitochondrial substrate carrier family protein (.1) AT5G01500 98 / 3e-22 TAAC thylakoid ATP/ADP carrier (.1) AT5G61810 95 / 1e-21 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT4G26180 92 / 1e-20 Mitochondrial substrate carrier family protein (.1) AT5G48970 91 / 3e-20 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034806 [exp] 641 / 0 AT3G20240 491 / 5e-175 Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 184 / 2e-54 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 184 / 2e-54 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10030076 [exp] 182 / 4e-53 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 105 / 4e-25 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 103 / 1e-24 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 103 / 1e-24 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10016736 [exp] 104 / 3e-24 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 103 / 4e-24 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G004100 [exp] 496 / 1e-176 AT3G20240 494 / 1e-176 Mitochondrial substrate carrier family protein (.1) Potri.010G253600 [exp] 410 / 3e-143 AT3G20240 388 / 6e-135 Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 192 / 2e-57 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 191 / 4e-57 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 108 / 3e-26 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 105 / 2e-25 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 105 / 4e-25 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 102 / 2e-24 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 102 / 3e-24 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.016G115400 [exp] 101 / 1e-23 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10033351 pacid=23172232 polypeptide=Lus10033351 locus=Lus10033351.g ID=Lus10033351.BGIv1.0 annot-version=v1.0 ATGGGTTTTGAATTGGAATCTCATCAGCAGACGGTGAAGAAGGCCAACAACAACGCCAAAGTCGAAGGTGTTTTCGGCGACGTCTGCGCCATGACCGTTT TGCTCCCCAAGGGACTTGAGCTTGACAATTTCGATAATCCTGTCTCGGTTCTTCCTCCTCCTCCATCTGATTCGTTTCCTCGCCTTGACTTCCCCTTTCG TCTTCCTGACATAGGCCTTGCTATCCGAAATATCACCAAGACTAGAGAAGTTGGGGAGTTCCTTAGTGGTGCCTTAGCTGGTGCAATGTCCAAAGCTGTA CTTGCTCCTTTAGAGACCATCAGGACAAGGATGGTTGTGGGGGTTGGATCTAAAAACATCTCCGGCAGTTTTATCGAAGTTGTTGAGCAACAAGGCTGGC AAGGGCTGTGGGCTGGCAATGCTATCAATATGCTCCGTATCGTCCCAACCCAAGCAATTGAGCTTGGTACATTTGAGTGTGTGAAGCGGACATTGACCGC AGCACAAGAGAAAGCTAAACAGTCTGAATCTCCAAGACTACAAATTGGTTCTTTCAGATTGAACTTTTCTCTTTCATGCATTTCTCCTGTTGCTGTCGCC GGTGCTGCTGCTGGCATCGCTAGCACTCTCGTGTGTCACCCTCTTGAAGTTTTGAAGGATCGGTTGACTGTTAGCCCCGACCTATACCCTAACCTAACTC TAGCAATTAGTAGCATTTACAAGGATGGAGGTATAGGTGCCTTCTATTCTGGTCTTAAACCTACACTGATTGGTATGCTTCCGTATAGTACATGCTACTA TTTCATGTACGATACTGTGAAGACTAAATATTGCAAGTCGAAGAATAAGAAGTCGTTGAGTCGTCCGGAAATGCTCGCCCTTGGTGCAGTTGCAGGTTTG ACGGCCAGCACCATAAGCTTTCCACTGGAGGTAGCTAGGAAACGACTGATGGTGGGAGCTCTGAAGGGCAAATGTCCCCCTAACATGGCGGCTGCTCTCG CTGAAGTCATCCGGGAGGAGGGACTACTGGGGATGTACAGAGGCTGGGGTGCAAGTTGTTTGAAAGTCATGCCAAACTCTGGCATCACTTGGGTGTTTTA CGAAGCGTGGAAAGACATACTACTAGGTGAGAAGCGACTTCTATGA
AA sequence Show only first row Show all	>Lus10033351 pacid=23172232 polypeptide=Lus10033351 locus=Lus10033351.g ID=Lus10033351.BGIv1.0 annot-version=v1.0 MGFELESHQQTVKKANNNAKVEGVFGDVCAMTVLLPKGLELDNFDNPVSVLPPPPSDSFPRLDFPFRLPDIGLAIRNITKTREVGEFLSGALAGAMSKAV LAPLETIRTRMVVGVGSKNISGSFIEVVEQQGWQGLWAGNAINMLRIVPTQAIELGTFECVKRTLTAAQEKAKQSESPRLQIGSFRLNFSLSCISPVAVA GAAAGIASTLVCHPLEVLKDRLTVSPDLYPNLTLAISSIYKDGGIGAFYSGLKPTLIGMLPYSTCYYFMYDTVKTKYCKSKNKKSLSRPEMLALGAVAGL TASTISFPLEVARKRLMVGALKGKCPPNMAAALAEVIREEGLLGMYRGWGASCLKVMPNSGITWVFYEAWKDILLGEKRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20240			Mitochondrial substrate carrie...		Lus10033351 [exp]	0	1
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	1.4	0.8681
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10035713 [exp]	5.8	0.8219
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10015039 [exp]	9.5	0.8739
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10003987 [exp]	10.4	0.8558
AT5G63120			P-loop containing nucleoside t...		Lus10019484 [exp]	13.2	0.7914
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	14.7	0.8317
AT3G25680			unknown protein		Lus10035054 [exp]	23.9	0.8125
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	28.4	0.8611
AT3G52270			Transcription initiation facto...		Lus10040084 [exp]	33.2	0.8188
AT1G56350			Peptide chain release factor 2...		Lus10031411 [exp]	39.1	0.7852

Compare expression of checked genes

Lus10033351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.