Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78895 206 / 3e-69 Reticulon family protein (.1) AT1G16825 192 / 9e-64 Reticulon family protein (.1) AT3G10915 46 / 2e-06 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034807 [exp] 237 / 3e-81 AT1G78895 226 / 7e-77 Reticulon family protein (.1) Lus10029041 [exp] 41 / 8e-05 AT3G10915 170 / 1e-54 Reticulon family protein (.1.2.3.4.5.6) Lus10034224 [exp] 41 / 0.0001 AT3G10915 291 / 1e-100 Reticulon family protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G004200 [exp] 221 / 2e-74 AT1G78895 229 / 1e-77 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10033352 pacid=23172242 polypeptide=Lus10033352 locus=Lus10033352.g ID=Lus10033352.BGIv1.0 annot-version=v1.0 ATGGAGAGTAACGGCGACGGCGGCGGAGGAGGAGGAGGAGGAAGTGGCAGCATCAAGAAGAGCGAAATAGGAAGGCCAATTATAGGAATGGTATGTGGTT CGCTTGTGTACTACCACTGTGCGTATCGGAACTCCAGCCTTCTCTCTCTTCTCTCCGACGTCTTCATCGTCCTTCTCTGCTCCCTCGCCATTCTCGGCCT TCTCTTCCGTCAATTGAACATCTCATTACCTGTGGATCCACTTGAGTGGCAGATCTCTCAAGACACTGCTAACACTATTGTTGCGTGGTTTGCTAATACC ATCGGAGCTGCTGAATCTGTTTTGAGGGTTGCAGCAACTGGACATGACAAGAGGTTATTCTTCAAGGTCGTAAGCTGTCTCTATGTACTATCAGCTTTGG GACGATTGGTCTCAGGTGTCACAGTTGCCTATGCTGGTAAGCGCTCCACACGAGCTTTGTTCATGTTGCAAATTAACTAA
AA sequence Show only first row Show all	>Lus10033352 pacid=23172242 polypeptide=Lus10033352 locus=Lus10033352.g ID=Lus10033352.BGIv1.0 annot-version=v1.0 MESNGDGGGGGGGGSGSIKKSEIGRPIIGMVCGSLVYYHCAYRNSSLLSLLSDVFIVLLCSLAILGLLFRQLNISLPVDPLEWQISQDTANTIVAWFANT IGAAESVLRVAATGHDKRLFFKVVSCLYVLSALGRLVSGVTVAYAGKRSTRALFMLQIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	0	1
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	1.7	0.9556
AT2G27480			Calcium-binding EF-hand family...		Lus10019545 [exp]	4.1	0.9323
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	4.2	0.9529
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10025024 [exp]	4.2	0.9411
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	7.5	0.9431
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	7.7	0.9470
AT2G32070			Polynucleotidyl transferase, r...		Lus10018330 [exp]	8.1	0.9402
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	8.4	0.9454
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	8.5	0.9420
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	8.5	0.9386

Compare expression of checked genes

Lus10033352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.