Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20250 684 / 0 APUM5 pumilio 5 (.1) AT4G25880 546 / 0 APUM6 pumilio 6 (.1.2.3) AT2G29190 488 / 8e-158 APUM2 pumilio 2 (.1.2) AT2G29200 484 / 2e-156 APUM1 pumilio 1 (.1) AT2G29140 484 / 2e-156 APUM3 pumilio 3 (.1) AT3G10360 452 / 7e-144 APUM4 pumilio 4 (.1) AT1G22240 192 / 1e-52 APUM8 pumilio 8 (.1) AT5G56510 186 / 1e-49 APUM12 pumilio 12 (.1) AT1G78160 186 / 3e-49 APUM7 pumilio 7 (.1) AT4G08840 154 / 2e-39 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034808 [exp] 1645 / 0 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10000516 [exp] 483 / 1e-163 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 497 / 5e-161 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10016513 [exp] 490 / 3e-157 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10040782 [exp] 475 / 7e-152 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 471 / 7e-152 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 471 / 2e-151 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 463 / 6e-148 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 458 / 4e-146 AT3G10360 928 / 0.0 pumilio 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G004300 [exp] 956 / 0 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.003G009900 [exp] 736 / 0 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.006G165100 [exp] 732 / 0 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.010G201100 [exp] 499 / 8e-162 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 493 / 8e-159 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 493 / 1e-158 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G058300 [exp] 484 / 8e-156 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.008G036500 [exp] 456 / 7e-145 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 445 / 5e-141 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.003G222300 [exp] 219 / 5e-60 AT5G56510 497 / 4e-168 pumilio 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat CL0020 [flax] [poplar] PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10033353 pacid=23172174 polypeptide=Lus10033353 locus=Lus10033353.g ID=Lus10033353.BGIv1.0 annot-version=v1.0 ATGGCAACTGAGAGCCCTGTGAGAATGGTGGAGGGTAGAAAATGGTCTTCAACCAAGGATGCTGCTAGTTATGGATCACCCTTAAAGTCGTCTATTGCTG CTGAAGAATTGGGGTTACTTCTTAAAGGGCATAGGATCCACACAGATCAATCAGAAAGTGTTCCGAATCGAAGTGGTAGTGCACCGCCAAGCTCCCTTTC AACTCATAAGGAGGAGCCTGAAGATGAAAGATCATCCAAGGAAGAATCAGAAAACTCCTTTGATAATAGCAGTGTTCTCATCTCGGGCCATGGTGCTTTT GCAGCTGCTCGTCATAAAAGTCTAGTGGATCTCATACAGGAAGACTTCCCTCGGACCCCTTCTCCTGTGTATAGTCATTCTCGTTCCTCAGGTCATGCTG CAGATGATGCTGAACAAGATATCCATACTGCTACATCGAATATTTCTTCTATTAGCTTGTCAGAAGCACCCGAAAAAAGTGGTGGTTCTGATGTTGAAAT TGATGAAGATGCATATGAACTTGAGGTTCATGCTCCCAAATTATCACCGGGAAATGACAGTCAAACATCCTCTTTCCCAAGAACTCCGCTCCAGAAACGG GATGAATCTGGCACAAATGAAGCTGGTCAGGAAGGTGATTCCCCTATTATTGGCTCCGTTGCAGAGCCTAGGATGAGAAACAGACAAGAGCAACAATCTT ACAGCCGAAATGCACCTCAGCAGCATCCATCTATGCATAATACTAATTCGCATCAGGCTCATGGACTCCCTGCTCTCATGGTTTCACAAGCAATGAATCA TCCTCACGGTCCTGTTAATAACATATCCCATGGCCACCCAAGTTTCCCATCAATGGACGTACAGCCATCATTGAACTCCTCTACACTTAACCCTCCATTA TATGCAACTGCAGCAGCCTATATGACAGCAGGGAGTCCATTCTATCCAAACTTCCAACCATCTGGTCTGTACTCTCCACATTATGGTTTGGGAGGATATG CGATGGGTTCAACGTTTCTCCCCCCATATATGACGAGCTATCCTTCACATGGTCCTATTCCTATGCCATTTGGTGCTGCTTCGGCACCAGGTACTGATGG CAGGACTGCTGCTCCCTTGACTGGGGAAAGCATTGCACATATAGGAGGGTCACATCAGCAAGGGAAGTTTTATGGGCCTCATGGATTAATGCATCAACCT CCATCTCTCATGGATCCTCTTCACATGCAATATTTTCAGCATCCATTCGGAGATGCATATGGTCCCACAGTTCAGCATGACCACCTAGCATCAAGTGGAA CTAGTGGGGCTCAACTCGAAGCCGCCTTTGCTCAAAGGAGAGAGCTGTCTGCTCCTACATACTTGGGCGACAGGAACCTCCAACCTCCTACCTATGGAAA CCTAAGCATTCCAAGCCCAGGAAAAGTAGGAGTTACTGGCAATAGCTACTATGGGGGGCCTGGAACTATCGGTGTGATGTCCCAGTTCCCAGCCTCACCT CTTCCTAGTCCTGTATTGCCTTCTTCCCCAGTGGCGACAGTGAATCATTTTGCACGGCGAAGTGAAGGAAGGTATCCCCAGGCTTCAAACAGAAATGCAG GCCTCTACTCAGGAAGTCAAGGCCCAAGGGGGATCAACAGCTTTGATGACCACAAAAGGCATTACTTTCTTGAAGAGCTCAAATCGAGCAATGCACGCAA GTTTGAGCTCTCTGATATAGTGGGCCATATAGTTGAATTCAGTGTTGATCAACATGGAAGTCGATTTATCCAGCAAAAGCTGGAACACTGCAGTGCCGGG GAGAAAGATTCTGTCTTTAAGGAAGTGCTTCCTCATGCTTCAAAGTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAGTTTTTCGAACATGGAA GTACTGAACAGCGAAAAGAGCTTGCAGATAAACTTGCTGGCCAGGTGCTGGAGTTGAGTCTGCAGATGTATGGTTGTCGTGTGATACAGAAGGCCCTTGA GGTGATCGAGCTTGACCAGAAAGCACAACTCGTTCAAGAGCTTGATGGTCACGTGATGAGATGCGTTCGTGATCAGAATGGGAATCATGTGATCCAGAAA TGCATAGAATGTCTTCCTTCGGAAAATATTGATTTTATTATTTCTGCTTTTAGAGGCCAAGTTGCAACACTGTCTACTCATCCTTATGGATGTCGTGTGA TTCAAAGAGTTCTGGAACATTGTTCTGAAGGTCAGCAAAGCCAGTGTATAGTTGATGAGATTTTGGAATCTGCTTTCCATCTTGCTCAAGACCAGTATGG AAACTATGTCACCCAGCATGTTCTGGAGAGGGGTAAGGAGTATGAGAGGAGTCAAATTATCAGCAAGTTGAATGGGAAGGTCATACAGATGAGTCAGCAT AAATACGCATCAAATGTTGTTGAGAAGTGTCTCGAATATGGTGATGTTGCTGAACGTGACCTCTTGATAGAGGAGATCATTAGGCGACCTGAAGATAACG ATGGCTTGTTGACTATGATGAAGGACCAATTTGCCAATTATGTGATTCAGAAGATTCTTGATATTGGGAGTGAGAGGCAGAAAGAAGTACTGCTCAATCA CATAAAAATCCATATTAATGCTTTGAAGAAATACACTTATGGGAAGCACATAGTTGCTCGGTACGAACAGCTATGTGGTGAAGGTATGCATCTCTGTGTT TGTACATTCATTTTTTCCGTGGCTTCCTCCGCTTAA
AA sequence Show only first row Show all	>Lus10033353 pacid=23172174 polypeptide=Lus10033353 locus=Lus10033353.g ID=Lus10033353.BGIv1.0 annot-version=v1.0 MATESPVRMVEGRKWSSTKDAASYGSPLKSSIAAEELGLLLKGHRIHTDQSESVPNRSGSAPPSSLSTHKEEPEDERSSKEESENSFDNSSVLISGHGAF AAARHKSLVDLIQEDFPRTPSPVYSHSRSSGHAADDAEQDIHTATSNISSISLSEAPEKSGGSDVEIDEDAYELEVHAPKLSPGNDSQTSSFPRTPLQKR DESGTNEAGQEGDSPIIGSVAEPRMRNRQEQQSYSRNAPQQHPSMHNTNSHQAHGLPALMVSQAMNHPHGPVNNISHGHPSFPSMDVQPSLNSSTLNPPL YATAAAYMTAGSPFYPNFQPSGLYSPHYGLGGYAMGSTFLPPYMTSYPSHGPIPMPFGAASAPGTDGRTAAPLTGESIAHIGGSHQQGKFYGPHGLMHQP PSLMDPLHMQYFQHPFGDAYGPTVQHDHLASSGTSGAQLEAAFAQRRELSAPTYLGDRNLQPPTYGNLSIPSPGKVGVTGNSYYGGPGTIGVMSQFPASP LPSPVLPSSPVATVNHFARRSEGRYPQASNRNAGLYSGSQGPRGINSFDDHKRHYFLEELKSSNARKFELSDIVGHIVEFSVDQHGSRFIQQKLEHCSAG EKDSVFKEVLPHASKLMTDVFGNYVIQKFFEHGSTEQRKELADKLAGQVLELSLQMYGCRVIQKALEVIELDQKAQLVQELDGHVMRCVRDQNGNHVIQK CIECLPSENIDFIISAFRGQVATLSTHPYGCRVIQRVLEHCSEGQQSQCIVDEILESAFHLAQDQYGNYVTQHVLERGKEYERSQIISKLNGKVIQMSQH KYASNVVEKCLEYGDVAERDLLIEEIIRRPEDNDGLLTMMKDQFANYVIQKILDIGSERQKEVLLNHIKIHINALKKYTYGKHIVARYEQLCGEGMHLCV CTFIFSVASSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	0	1
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	1.4	0.9740
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022838 [exp]	2.0	0.9539
AT3G04600			Nucleotidylyl transferase supe...		Lus10018331 [exp]	4.1	0.9398
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10036878 [exp]	4.5	0.9376
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	4.9	0.9472
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10040499 [exp]	5.5	0.9441
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	5.7	0.9508
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	6.0	0.9446
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	6.2	0.9521
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	9.5	0.9417

Compare expression of checked genes

Lus10033353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.