Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20260 364 / 2e-123 Protein of unknown function (DUF1666) (.1) AT1G73850 89 / 6e-19 Protein of unknown function (DUF1666) (.1) AT5G39785 82 / 1e-16 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) AT1G69610 52 / 4e-07 Protein of unknown function (DUF1666) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034809 [exp] 548 / 0 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1) Lus10027226 [exp] 123 / 3e-30 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1) Lus10038936 [exp] 119 / 3e-29 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1) Lus10007264 [exp] 86 / 9e-18 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10015368 [exp] 66 / 2e-11 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10037176 [exp] 56 / 5e-08 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10036751 [exp] 56 / 5e-08 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G004400 [exp] 431 / 2e-149 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) Potri.012G056400 [exp] 123 / 1e-30 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 117 / 3e-28 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.017G082300 [exp] 91 / 3e-19 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.004G126800 [exp] 80 / 6e-16 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G084200 [exp] 74 / 3e-14 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [flax] [poplar] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Lus10033354 pacid=23172250 polypeptide=Lus10033354 locus=Lus10033354.g ID=Lus10033354.BGIv1.0 annot-version=v1.0 ATGGATCTGTTCAAAGTGAGGAAGTTCAGAAGAGCTCACAAACCAGAACCAGAGAAAGAACCAGAGGACAAGCCTGTTCCAAACCCACAAGAGCCTAAGA AAGACTCTGATGATTTGAGTAACAACAAGGACAAATCAACTGAAAATGTGGCTGCAGAAGGAGATGCAGAGGACGATGATGATGACTTCATAACCAATGA AGTGAAGAGGAGGTTAAAGGAGCTGAGAAGGAACAGCTTCATGGTGTTGATTCCGGAGGAAGAGTCTTTCCCTGAGGAAGAAGAAGAAGAGGAGGATGCA GAAGGAAGGGCGGAGGAGACCATCTGTGGGGAATGGAGAGATGTTGAAGCTCAAGGAAGGCAATGGTGGGGTGGCTTTGATGCTGTTTATGATAAGTACT GCGACAGAATGCTCTTCTTTGATCGTATGAGCCTCCTCCAGCTTAATGAAAATGGTTGTTATATGCCTACTACTCCGTCCCCAAAGTCATCGTCGAAGAA GCTACCATCTCCCTTCCGTTGCCTATCGATGAAGAAAATGGAAGAACCTGAAGACGAAACTGAGCATCTGCAGCAGCCAATGAACGATCCATACCAAGAT CTCGAGACAGCGTACGTGGCTCAGATGTGCTTGACTTGGGAGGCACTCCATTGCCAATACACTCAACTGTGTCAGAGAATTTCATGCCAGCCTGAAAACC CCACGTGTTACAATCACAGTGCTCAGCTGTTTCAGCAGTTTCAAGTCCTGCTGCAACGGTTCATCGAGAACGAGCCCTTTGAGCAAGGTTCAGATGCAAA AGAGGCAGAAGAGCTAGAATCGGATTCGAGGGTACATGCCCCTGATCTCATTCGAGTTATAGAGAGTTCGATTCTTACTTTCCAAATTTTCGTCAAGATG GACAAGAAAAAGCAGAATGCTGTAATTACATTGTTTGGGAACCAGAATCAGATTGCTTTACCACTTCAGATGATCCAGTCTTCAATAGACAAGAAAAAGG TGAGGCTGAAGGAACTATGCAAGAAGAGTAAAGGATGGAAGAAGAAATCATGGCCAGAAAGGTACGAGGACGTTCAGCTATTATTCGGGCTCATTGACAT CAAAATCGTATGTCGTGTACTTAGGATGGTGAGGATCAGTAAAGAACAGTTGATTTGGTGTGAGGACAAGATTAAGAAACTGAACTTGGCAGAAAATAAG CTGGTGAGAGATCCCTCTCCAATCCTGTTCCCTTGCTAG
AA sequence Show only first row Show all	>Lus10033354 pacid=23172250 polypeptide=Lus10033354 locus=Lus10033354.g ID=Lus10033354.BGIv1.0 annot-version=v1.0 MDLFKVRKFRRAHKPEPEKEPEDKPVPNPQEPKKDSDDLSNNKDKSTENVAAEGDAEDDDDDFITNEVKRRLKELRRNSFMVLIPEEESFPEEEEEEEDA EGRAEETICGEWRDVEAQGRQWWGGFDAVYDKYCDRMLFFDRMSLLQLNENGCYMPTTPSPKSSSKKLPSPFRCLSMKKMEEPEDETEHLQQPMNDPYQD LETAYVAQMCLTWEALHCQYTQLCQRISCQPENPTCYNHSAQLFQQFQVLLQRFIENEPFEQGSDAKEAEELESDSRVHAPDLIRVIESSILTFQIFVKM DKKKQNAVITLFGNQNQIALPLQMIQSSIDKKKVRLKELCKKSKGWKKKSWPERYEDVQLLFGLIDIKIVCRVLRMVRISKEQLIWCEDKIKKLNLAENK LVRDPSPILFPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	0	1
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	1.0	0.9759
AT5G62710			Leucine-rich repeat protein ki...		Lus10033104 [exp]	1.4	0.9641
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	4.5	0.9540
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10036576 [exp]	5.1	0.9397
AT1G71760			unknown protein		Lus10030260 [exp]	5.3	0.9468
AT5G07380			unknown protein		Lus10032518 [exp]	6.2	0.9234
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	6.3	0.9502
AT5G62710			Leucine-rich repeat protein ki...		Lus10036672 [exp]	6.6	0.9348
AT4G37130			hydroxyproline-rich glycoprote...		Lus10022470 [exp]	6.7	0.9369
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10005783 [exp]	7.6	0.9140

Compare expression of checked genes

Lus10033354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.