Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78955 981 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 981 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78950 969 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G78970 937 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT1G66960 918 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78500 829 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT5G36150 828 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT4G15340 816 / 0 04C11, ATPEN1 pentacyclic triterpene synthase 1 (.1) AT4G15370 812 / 0 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1) AT2G07050 808 / 0 CAS1 cycloartenol synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013546 [exp] 916 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 905 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 843 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10032146 [exp] 807 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 799 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10016440 [exp] 749 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10016439 [exp] 743 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10025684 [exp] 684 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10008544 [exp] 641 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002400 [exp] 986 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 984 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002100 [exp] 937 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 928 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.001G049100 [exp] 922 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 857 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.004G015600 [exp] 834 / 0 AT1G78960 907 / 0.0 lupeol synthase 2 (.1) Potri.004G132500 [exp] 830 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.006G079300 [exp] 808 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.006G079200 [exp] 807 / 0 AT2G07050 1116 / 0.0 cycloartenol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10033355 pacid=23172136 polypeptide=Lus10033355 locus=Lus10033355.g ID=Lus10033355.BGIv1.0 annot-version=v1.0 ATGTGGAGGCTTAAAATTGGAGAGGGAAGAAATAGCAGCAAAGTGGTGGATCCATATCTGAGCAGCAAATTCAACTTCTTGGGGAGGCAGACATGGGAAT TCGACCCCGACGCCGGTTCGCCCGAGGAGCGGGCCGAAGTGGAGGAAGCTCGTCTCGATTACTACCGAAACCGGTTCCGAGTCAAGTCCAGTTCTGACCT TCTGTGGCAGTTTCAGTACCTGAGAGAGAAGGGTTTCAAGCAGAGGATACCAAAAGTAAAGGAAATAGAAGAAGAGGAAGAGATAAGAGATGCGGTCAGG GAAGCGGCGGTAGAGAGAGGAGTTTACTATTTGGCGGCGCTGCAAGGTGGCGACGGACATTGGCCGGCACAAGAAGCAGGGACCATGTTCTATCTCCCAC CGTTGGTGATATGTCTCTACATAACTGGACATCTTAATGTTGTGTTTCCGACAGTTGAGCATCGCAAGGAAGCTCTTCGCTACATCTATAATCACCAGAA TGAAGATGGAGGGTGGGGACTCCACGTGGAAGGACACAGCACAATGTTCTGTACGGCACTATGTTACGTGGCAATGAGAATAATGGGACAACCCCCCGAC GGCGGCAGAGACGACGCCTGCCAAAGAGCTCGAACCTGGATTCTTGACCGTGGCGGTGTTACTTACATTTCTTCCTGGGGCAAATTCTGGCTTTCGCTAC TCGGTTTGATGGAGTGGTCAGCAAACAACCCAATCCCTCCAGAGTTTTGGCTGTTACCATCCTTTCTTCCTCTGCATCCCGCAAAAATGTGGTGTTATAG TAGAATGGTGTACATGCCAATGTCGTATTTATACGGGAAGAGATACGTGGGGACCATCACTCCTCTGGTTCTTCAACTCCGTCAAGAACTCCACACCCAA CCCTACCATCAAATTGATTGGACCAAAGCTCGCCACTCCTGTGCCAAGGAGGACATATGTCATCGGCGTCCTTGGATACAAGATGTAGTGTGGGATGTAC TTGATGCAGTTGCAGAGCCGATACTAAGGAGCTGGCCATTTTCAAAGTTGATTAGAGAGAGAGCTATGGAGGCTGCTATGAAACACATTCATTATGAAGA CAAAGCCAGCCAATACATTACTCTCGCCAGCGTTAATAAGGCGTTATGCATGCTGGCCTGCTGGGTACAAGATCCAAATGGAGACCATTACCAAAAGCAT CTCTCCAGATTTCCTGATTATATATGGGTCGCTGAAGATGGCCTCCAAATTCAGGGGCTAGGGAGCCAAGTGTGGGACACGGTATTTGGGATTCAGGCTT TGCTCTCCAGCAACATTGTCACTGACGAAATTGGACAAGTTCTATCTAAAGCCCACCACTTCTTGAAGAAATCCCAGACAAGGGAGGATCCACCAGGTGA CTTTCAGGGCATGTATCGGCACCTGGCCAAAGGTTCATGGGGATACTCTGATCCAGACCAGGGATGGCCCACTTCTGATTGTACCGCCGAGAGTTTGACT TGTTGCTTACTCTTGTCTATGAAACCGGCAGATTTAGTAGGTGAAAGCATTGAGACAGAAAGATTGTACGATGCTGTGGACTTTCTTCTTTCTCTACAGA GTGAAAATGGAGGCATGCCAGCATGGGAACCGGCAAGAGGCAGACCATGGATGGAGAAATTCAACCCGACGGAATTTGTGGACAACATTATGATTGAGCA CGAATACGTGGAGTGCACCTGTTCTACGATCAAATCACTGGTTTTGTTCAGAAAGTTGCATCCATCCTACCGAAGAAAAGATGTCGAGAACAGCATTGCG AAAGCTGTCCGATTCGTTCAAGCATCGCAGCAGCCCGATGGCTCATGGTACGGTACTTGGGGGGTATGCTACATATATGGGACATGGTTTGCATTGGAAG GCTTAGTGGCTGCTGGTTACACTTACCATAATTCTGCAGCAGTTCGTAAAGGAGTGGATTTTCTGCTAGCAACCCAACTACATGATGATGGTGATGATGG ATGGGGGGAGAGCTTCCACTCTGCTTCTCAAAAGAAATTTTGTGAGCTTGGAAGGTCAAATTTGGTACAAACTGCTTGGGCACTCATGGCTCTCATTCAC ACTGGACAGGCAGAGAGAGATGCGAAGCCCCTGCATGGAGCTGCAAAGCTGTTGATCAATTCCCAATTAGATTCTGGTGGTTTCCCACACCAGCAGATTA CAGGACTTTTCAGAGCAAGCTGCACTCTCCATTTTGCAAATTACAGACTTCTATTTCCCATCTGGGCACTCGCGGAATACCGTGCCTGTGTCCCCCTTCC TTCATAG
AA sequence Show only first row Show all	>Lus10033355 pacid=23172136 polypeptide=Lus10033355 locus=Lus10033355.g ID=Lus10033355.BGIv1.0 annot-version=v1.0 MWRLKIGEGRNSSKVVDPYLSSKFNFLGRQTWEFDPDAGSPEERAEVEEARLDYYRNRFRVKSSSDLLWQFQYLREKGFKQRIPKVKEIEEEEEIRDAVR EAAVERGVYYLAALQGGDGHWPAQEAGTMFYLPPLVICLYITGHLNVVFPTVEHRKEALRYIYNHQNEDGGWGLHVEGHSTMFCTALCYVAMRIMGQPPD GGRDDACQRARTWILDRGGVTYISSWGKFWLSLLGLMEWSANNPIPPEFWLLPSFLPLHPAKMWCYSRMVYMPMSYLYGKRYVGTITPLVLQLRQELHTQ PYHQIDWTKARHSCAKEDICHRRPWIQDVVWDVLDAVAEPILRSWPFSKLIRERAMEAAMKHIHYEDKASQYITLASVNKALCMLACWVQDPNGDHYQKH LSRFPDYIWVAEDGLQIQGLGSQVWDTVFGIQALLSSNIVTDEIGQVLSKAHHFLKKSQTREDPPGDFQGMYRHLAKGSWGYSDPDQGWPTSDCTAESLT CCLLLSMKPADLVGESIETERLYDAVDFLLSLQSENGGMPAWEPARGRPWMEKFNPTEFVDNIMIEHEYVECTCSTIKSLVLFRKLHPSYRRKDVENSIA KAVRFVQASQQPDGSWYGTWGVCYIYGTWFALEGLVAAGYTYHNSAAVRKGVDFLLATQLHDDGDDGWGESFHSASQKKFCELGRSNLVQTAWALMALIH TGQAERDAKPLHGAAKLLINSQLDSGGFPHQQITGLFRASCTLHFANYRLLFPIWALAEYRACVPLPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	0	1
AT5G04885			Glycosyl hydrolase family prot...		Lus10013388 [exp]	1.7	0.9781
AT1G65330	MADS	AGL37, PHE1	PHERES1, AGAMOUS-like 37, MADS...		Lus10004150 [exp]	2.4	0.9691
					Lus10035120 [exp]	2.4	0.9658
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	3.9	0.9415
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	4.2	0.9130
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	4.5	0.8838
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10041592 [exp]	6.8	0.8384
					Lus10015131 [exp]	8.1	0.8810
					Lus10001031 [exp]	8.4	0.9075
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	11.5	0.8781

Compare expression of checked genes

Lus10033355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.