Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50430 662 / 0 ST7R, PA, LE, 7RED, DWF5 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) AT3G52940 119 / 1e-29 ELL1, HYD2, FK FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034811 [exp] 742 / 0 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10035723 [exp] 736 / 0 AT1G50430 759 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10037309 [exp] 531 / 0 AT1G50430 489 / 2e-173 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10003377 [exp] 115 / 3e-28 AT3G52940 581 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G253200 [exp] 693 / 0 AT1G50430 764 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.008G005200 [exp] 687 / 0 AT1G50430 753 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.006G116200 [exp] 121 / 2e-30 AT3G52940 508 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.010G253301 [exp] 66 / 2e-13 AT1G50430 49 / 6e-08 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF01222 [flax] [poplar] ERG4_ERG24 Ergosterol biosynthesis ERG4/ERG24 family
Representative CDS sequence Show only first row Show all	>Lus10033356 pacid=23172035 polypeptide=Lus10033356 locus=Lus10033356.g ID=Lus10033356.BGIv1.0 annot-version=v1.0 ATGGTGGAATCGAATGTAGTTCATTCCCCTCTCGTCACTTACGTCTCCGTCGTCTCCCTCCTTTCTCTCTGTCCTCCTTTCGTCATTCTCCTATGGTATA CGATGGTGCACTCTGATGGTTCAGTATCCCAAACTTGGGATTATCTGGCTCAAACTGGGTTGAAGGGACTCATCGAAATATGGCCAAAACCAACTGCTAC TGCCTGGAAAATAATTGGTTGCTATGCTGCATTTGAGGCTGCACTCCAGCTTCTCTTACCTGGAAAAACTGTTGAAGGTCCAATTTCTCCAAAGGGAAAC CGACCTGTTTACAAGGCAAATGGCGTGCTCGCATATGCAATGACAATGGTTACATATGTTGGCTTATGGTGGTTTGGGATATTCAACGCTGCAATGGTGT ATGATCATTTAGGGGAAATTTTCTCAGCTCTCATTTTTGGAAGCTTAATCTTCTGCGCTTTCCTGTATATTAAAGGTCATGTGGCACCATCATCTACTGA TTCTGGCTCCCTTGGGAACATAATAATTGATTTCTACTGGGGCATGGAGCTGTACCCTCGAATTGGCAAGAACTTCGACATCAAAGTTTTCACGAACTGC AGGTTTGGGATGATGGCTTGGGCAGTTCTTGCATTGACATACTGCTTTAAGCAGTATGAGCTCTATGGAAAAGTGGCTGATTCCTTACTGGTTAATACTA TACTGATGCTCGTGTATATCACAAAGTTTTTCTGGTGGGAGGCTGGGTATTGGAATACAATGGACATTGCCCATGATCGAGCTGGCTTTTATATCTGTTG GGGATGCTTGGTGTGGGTCCCCTCTGTATATACTTCCCCTGGCATGTACCTAGTCAACCATCCTGTAAACCTTGGATCTCAGCTTGCACTTTTCATATTG GCTGCTGGCATTGTCTGCATATATGTGAACTATGATTGTGACAGGCAAAGACAGGAATTCCGCAGGACAAATGGAAAGTGTTTAGTTTGGGGAAAGCCTC CTACAAAGATTGTGGCTTTTTATACTACCACTACTGGGGAGACTAAATCAAGCCTTCTCTTAACATCCGGATGGTGGGGCTTAGCTCGGCATTTTCATTA TGCTCCTGAAATATCAGCTGCCTTTTTTTGGTCTCTCCCAGCACTTTTCAATCATTTTATACCTTTATTCTATGTTATATTTCTCACCATCCTTCTTTTG GACCGAGCTACACGGGATGATGATCGTTGTCGTTCAAAGTATGGAAAATACTGGAAGCGGTACTGCGACAAGGTTCCTTACCGCATTATTCCTGGAATCT ATTGA
AA sequence Show only first row Show all	>Lus10033356 pacid=23172035 polypeptide=Lus10033356 locus=Lus10033356.g ID=Lus10033356.BGIv1.0 annot-version=v1.0 MVESNVVHSPLVTYVSVVSLLSLCPPFVILLWYTMVHSDGSVSQTWDYLAQTGLKGLIEIWPKPTATAWKIIGCYAAFEAALQLLLPGKTVEGPISPKGN RPVYKANGVLAYAMTMVTYVGLWWFGIFNAAMVYDHLGEIFSALIFGSLIFCAFLYIKGHVAPSSTDSGSLGNIIIDFYWGMELYPRIGKNFDIKVFTNC RFGMMAWAVLALTYCFKQYELYGKVADSLLVNTILMLVYITKFFWWEAGYWNTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGSQLALFIL AAGIVCIYVNYDCDRQRQEFRRTNGKCLVWGKPPTKIVAFYTTTTGETKSSLLLTSGWWGLARHFHYAPEISAAFFWSLPALFNHFIPLFYVIFLTILLL DRATRDDDRCRSKYGKYWKRYCDKVPYRIIPGIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10033356 [exp]	0	1
AT4G38040			Exostosin family protein (.1)		Lus10012723 [exp]	1.7	0.8987
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	3.6	0.9161
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10038146 [exp]	3.7	0.9024
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10027266 [exp]	8.0	0.8961
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10042528 [exp]	11.0	0.8849
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	12.1	0.8859
AT3G49720			unknown protein		Lus10011564 [exp]	12.2	0.8334
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	13.4	0.8900
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10012344 [exp]	14.0	0.8696
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	14.5	0.8860

Compare expression of checked genes

Lus10033356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.