Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034812 [exp] 62 / 5e-13 ND 51 / 7e-09 Lus10033358 [exp] 64 / 9e-13 ND 57 / 1e-09 Lus10033359 [exp] 61 / 4e-12 ND 54 / 6e-09 Lus10003550 [exp] 61 / 5e-12 ND 51 / 1e-08 Lus10033897 [exp] 59 / 1e-11 ND 51 / 4e-09 Lus10033898 [exp] 58 / 2e-11 AT5G09530 52 / 1e-09 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10033360 [exp] 53 / 2e-09 AT4G38080 49 / 5e-08 hydroxyproline-rich glycoprotein family protein (.1) Lus10034811 [exp] 54 / 7e-09 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10034813 [exp] 45 / 1e-06 AT5G09520 50 / 1e-08 Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033357 pacid=23172185 polypeptide=Lus10033357 locus=Lus10033357.g ID=Lus10033357.BGIv1.0 annot-version=v1.0 ATGGCCTCTTTCAACGGATTCGTACTTGGTCTCTTCATCGCCACCTTCGCATTTTCGAGCTTCAATGTTGGCCTAGCGGCTCGCCATCTCCTCCAGTTGC CAACACTTCCACAGATCCCTACCACCACCCCGGCTCTCCCCCAGCCAACTCTTCCTACATTGCCGCCGATGCCCGCCGCAATTCCATCTCTCCCAAAGCC AACACTGCCGTCATTGCCACCGATGCCCACTACGATGCCTACTCTCCCAAAGCCAACACTGCCATCATTGCCACCGATGCCCACCACGATGCCTACTCTT CCCCAGCCAGCACAGCCTACCTTCCCTAAAACTACACTGCCCCCACTCCCAAGCATCCCTGCAGTGCCATTGCCAACCATCCCCAAAGCAACTTTCCCTC CCATGCCGTCCATCCCTACCATTCCTTCCCTCGCCCCACCACCAAGCAAATAA
AA sequence Show only first row Show all	>Lus10033357 pacid=23172185 polypeptide=Lus10033357 locus=Lus10033357.g ID=Lus10033357.BGIv1.0 annot-version=v1.0 MASFNGFVLGLFIATFAFSSFNVGLAARHLLQLPTLPQIPTTTPALPQPTLPTLPPMPAAIPSLPKPTLPSLPPMPTTMPTLPKPTLPSLPPMPTTMPTL PQPAQPTFPKTTLPPLPSIPAVPLPTIPKATFPPMPSIPTIPSLAPPPSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033357 [exp]	0	1
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10034459 [exp]	1.0	0.9826
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10041747 [exp]	2.8	0.9666
					Lus10033358 [exp]	3.5	0.9508
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10017394 [exp]	4.0	0.9519
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10010193 [exp]	4.2	0.9490
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	4.2	0.9649
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	5.0	0.9509
					Lus10003550 [exp]	7.5	0.9494
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	10.2	0.9503
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10023465 [exp]	11.4	0.9385

Compare expression of checked genes

Lus10033357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.