Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034811 [exp] 115 / 1e-29 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10033897 [exp] 93 / 4e-24 ND 51 / 4e-09 Lus10003550 [exp] 93 / 1e-23 ND 51 / 1e-08 Lus10033359 [exp] 86 / 8e-21 ND 54 / 6e-09 Lus10033357 [exp] 83 / 5e-20 AT5G09530 61 / 1e-11 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10033898 [exp] 73 / 1e-16 AT5G09530 52 / 1e-09 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10034812 [exp] 72 / 5e-16 ND 51 / 7e-09 Lus10033360 [exp] 67 / 5e-14 AT4G38080 49 / 5e-08 hydroxyproline-rich glycoprotein family protein (.1) Lus10034813 [exp] 55 / 8e-10 AT5G09520 50 / 1e-08 Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G047400 [exp] 41 / 7e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033358 pacid=23172151 polypeptide=Lus10033358 locus=Lus10033358.g ID=Lus10033358.BGIv1.0 annot-version=v1.0 ATGGTAGGGATGGACGGCATGGGAGGGAAAGTTGCTTTGGGGATGGTTGGCAATGGCACTGCAGGGATGCTTGGGAGTGGGGGCAGTGTAGTTTTAGGGA AGGTAGGCTGTGCTGGCTGGGGAAGAGTAGGCATCGTGGTGGGCATCGGTGGCAATGATGGCAGTGTTGGCTTTGGGAGAGTAGGCATCGTAGTGGGCAT CGGTGGCAATGACGGCAGTGTTGGCTTTGGGAGAGATGGAATTGCGGCGGGCATCGGCGGCAATGTAGGAAGAGTTGGCTGGGGGAGAGCCGGGGTGGTG GTAGGGATCTGTGGAAGTGTTGGCAACTGGAGGAGATGGCGAGCCGCTAGGCCAACATTGAAGCTCGAAAATGCGAAGGTGGCGATGAAGAGACCAAGTA CGAATCCGTTGAAAGAGGCCATGGTCAGTTGGATGTCGAAACTGCTGCTTCTGGTTTTGTGTGTTCGTAGGTTTAGTGATGAGGAAAATGGTGGTGGGGA GTTGATGTTTTTATACTGGATTTTGGGTATCGTGGTGGGTGATTTTGGCATCAGATTTTGGTCGGATAAAGCTGAAAAGAAAAACAAGGGAGATAAGTCG GGAGCCATTTGGTTAGCTCAACTCCTCACCAAATCCTAA
AA sequence Show only first row Show all	>Lus10033358 pacid=23172151 polypeptide=Lus10033358 locus=Lus10033358.g ID=Lus10033358.BGIv1.0 annot-version=v1.0 MVGMDGMGGKVALGMVGNGTAGMLGSGGSVVLGKVGCAGWGRVGIVVGIGGNDGSVGFGRVGIVVGIGGNDGSVGFGRDGIAAGIGGNVGRVGWGRAGVV VGICGSVGNWRRWRAARPTLKLENAKVAMKRPSTNPLKEAMVSWMSKLLLLVLCVRRFSDEENGGGELMFLYWILGIVVGDFGIRFWSDKAEKKNKGDKS GAIWLAQLLTKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033358 [exp]	0	1
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033898 [exp]	1.0	0.9659
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Lus10043406 [exp]	2.2	0.9250
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033357 [exp]	3.5	0.9508
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022065 [exp]	4.0	0.9314
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10006908 [exp]	4.2	0.9116
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10034459 [exp]	5.7	0.9377
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10042611 [exp]	8.9	0.9101
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10010193 [exp]	10.2	0.9106
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10010575 [exp]	11.0	0.9074
					Lus10014682 [exp]	12.0	0.8922

Compare expression of checked genes

Lus10033358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.