Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033897 [exp] 67 / 2e-14 ND 51 / 4e-09 Lus10033898 [exp] 67 / 2e-14 AT5G09530 52 / 1e-09 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10033357 [exp] 66 / 7e-14 AT5G09530 61 / 1e-11 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10003550 [exp] 66 / 8e-14 ND 51 / 1e-08 Lus10033358 [exp] 66 / 3e-13 ND 57 / 1e-09 Lus10034812 [exp] 61 / 3e-12 ND 51 / 7e-09 Lus10034811 [exp] 59 / 1e-10 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10033360 [exp] 56 / 4e-10 AT4G38080 49 / 5e-08 hydroxyproline-rich glycoprotein family protein (.1) Lus10034813 [exp] 43 / 2e-05 AT5G09520 50 / 1e-08 Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033359 pacid=23172241 polypeptide=Lus10033359 locus=Lus10033359.g ID=Lus10033359.BGIv1.0 annot-version=v1.0 ATGGCTGGGATGGCTGGCATGGGAGGCAAAGTTGCCTTGGGGATGCTTGGGAGCGGGGGCAGCGTAGTAATTTTAGGGAGAGTAGGTTGGGGAAGAGTAG GAATGGTGGTGGGCATTGGTGGCAATGTTGGTAGAGTTGGCTTTGGGAGAGATGGAATTGTGGTAGGCATCGGTGGCAATGTTGGTAGAGTTGGCTTCGG GAGAGATGGAACTGCGGTGGGCATTGGTGGCAATGTAGGAAGAGTTGGCTGGGGGAGAGCCGGCATGGTGGTAGGGAACGGTGGTAGCGTTGGCAACTGG AGGAGATGTCGAGCGGCTAGGCCAACATTGAAGCTGGAGAATGCGAAGGTGGCGATGAAGAGACCGAGTACGAATCCGTTGAAAGAAGCCATGGTTCGGG TGCTGAGGCTGGTTAAGCTTGTAATGATGATATGTGCAGTGAAAGGGGTGCGTGAAAGGGAAAGGTTTTGTTGTGGGTTTTGGGATGAGGAAAATGGTGG TCGGGGATTTAGGTTTTATAAGGGATTCTTGCATTGA
AA sequence Show only first row Show all	>Lus10033359 pacid=23172241 polypeptide=Lus10033359 locus=Lus10033359.g ID=Lus10033359.BGIv1.0 annot-version=v1.0 MAGMAGMGGKVALGMLGSGGSVVILGRVGWGRVGMVVGIGGNVGRVGFGRDGIVVGIGGNVGRVGFGRDGTAVGIGGNVGRVGWGRAGMVVGNGGSVGNW RRCRAARPTLKLENAKVAMKRPSTNPLKEAMVRVLRLVKLVMMICAVKGVRERERFCCGFWDEENGGRGFRFYKGFLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033359 [exp]	0	1
					Lus10003550 [exp]	1.0	0.9886
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	2.0	0.9767
					Lus10018643 [exp]	4.5	0.9651
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	4.5	0.9720
					Lus10034812 [exp]	4.9	0.9642
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028860 [exp]	4.9	0.9590
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	4.9	0.9728
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10034813 [exp]	6.5	0.9603
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10034811 [exp]	7.5	0.9375
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	8.1	0.9291

Compare expression of checked genes

Lus10033359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.