Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41120 171 / 5e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G025200 [exp] 176 / 4e-54 AT2G41120 257 / 3e-86 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03745 [flax] [poplar] DUF309 Domain of unknown function (DUF309)
Representative CDS sequence Show only first row Show all	>Lus10033361 pacid=23172188 polypeptide=Lus10033361 locus=Lus10033361.g ID=Lus10033361.BGIv1.0 annot-version=v1.0 ATGGCGAATCACTGTGTAAAGTATAAGCCTCCATTGGCCATATCCTCTCCCTTCTTCTCTTCCACTACTTCATCATCCTCCTCCCACTATCGCATACCTC CTTCCACTTCCCCAAACTTCATTACAACCATCCGCCCTCTGCCTCCACGTTCGCGATTTGTCCCCTTCCGTAAGCCCTTAAGATCCTACAGCTGGCGACG CGGTCGATACACGGAGGCGGAAGATGATGATGAGGAGAACGAGAACAATTTATCCGTCCCGGCATCGGCGACGTTTGACGCGGCGGTGAATCAGTTCAAT CGGAGGCAATATTACGACTGCCACGACTCGCTGGAAGCGCTGTGGATGAGGGCGGAGAATGAGCGGAGCAGAACTCTGTTCCACGGCATCCTCCAGTGCG CCGTCGGATTCCACCACCTCTTCAATCAGAACCACAAAGGTGCGATGATGGAGCTAGGAGAAGGACTTTGTAAGCTGAGGAAGATGAATTTCGAGAGAGG TCCGTTCCGGCGATTTGAGGAAGAGATCTCGGCGGTGCTCGACTTCATCTATTTGACTCAGTTGCAACTCGCCGCCTGTGAGAGTCCTTCGCATTTTGGT CACCGTACGGAGGATATTTGTTTGGCGATGGATCAATCAGAAATATCGTACCAATTGCTGGGAGGTTACGGAGCTGGGCAGCAGATCTACAGTCTGGGAA GGGACGAACAAAGTGATGAAGTAGTAGGGGTAGGGGTGACTTTTCTTAAATTCTTACCGCCGATGCCCATTACGCCAAGTTCGGGTGTCGACGACCACCC ACTAAAGGTGAAGCTTCCGACACTTGATGTAACACACGAACATCTCCTTGGCATAAGCCGGTAG
AA sequence Show only first row Show all	>Lus10033361 pacid=23172188 polypeptide=Lus10033361 locus=Lus10033361.g ID=Lus10033361.BGIv1.0 annot-version=v1.0 MANHCVKYKPPLAISSPFFSSTTSSSSSHYRIPPSTSPNFITTIRPLPPRSRFVPFRKPLRSYSWRRGRYTEAEDDDEENENNLSVPASATFDAAVNQFN RRQYYDCHDSLEALWMRAENERSRTLFHGILQCAVGFHHLFNQNHKGAMMELGEGLCKLRKMNFERGPFRRFEEEISAVLDFIYLTQLQLAACESPSHFG HRTEDICLAMDQSEISYQLLGGYGAGQQIYSLGRDEQSDEVVGVGVTFLKFLPPMPITPSSGVDDHPLKVKLPTLDVTHEHLLGISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41120			unknown protein		Lus10033361 [exp]	0	1
AT5G47860			Protein of unknown function (D...		Lus10009920 [exp]	5.7	0.7622
AT2G48070		RPH1	resistance to phytophthora 1 (...		Lus10029632 [exp]	11.9	0.8264
AT4G27620			unknown protein		Lus10008948 [exp]	14.8	0.7334
AT1G54520			unknown protein		Lus10001794 [exp]	19.4	0.7975
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10026321 [exp]	21.2	0.8182
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	30.6	0.7261
AT5G36930			Disease resistance protein (TI...		Lus10004719 [exp]	31.2	0.7816
AT5G14970			unknown protein		Lus10014506 [exp]	33.0	0.7155
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10022384 [exp]	34.2	0.8125
AT5G38520			alpha/beta-Hydrolases superfam...		Lus10003969 [exp]	37.6	0.8095

Compare expression of checked genes

Lus10033361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.