Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 699 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 644 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 642 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 641 / 0 EFR EF-TU receptor (.1) AT3G47110 626 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 408 / 1e-125 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 399 / 8e-121 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 375 / 2e-112 Leucine-rich repeat protein kinase family protein (.1) AT3G49670 367 / 2e-110 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 371 / 5e-110 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031043 [exp] 1393 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 1368 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 1185 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 1183 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 942 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 939 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 920 / 0 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 893 / 0 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037311 [exp] 799 / 0 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034000 [exp] 780 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 766 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 758 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 750 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 748 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 748 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 739 / 0 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 735 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 730 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 728 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033362 pacid=23172258 polypeptide=Lus10033362 locus=Lus10033362.g ID=Lus10033362.BGIv1.0 annot-version=v1.0 ATGCCATCTCTTCTCAACGATATTTGCTTCCTCATACCAAAAGTTCGAACTTCCTTTCCACTTCACCTTTCGAAACACAGTTTAACAATGAAACATAACG AAATCTCTCATTTCCTCTTCCTCCTCTGTCCCCTGAAGCTCCTGTTCTTGCTGCTTTCACTCTCAGCCTCACTTAATCCTCCTTTTCAAGCAAATGCTTC TGGAAACAACCTCACCGACCGACTTACCTTACTCGAGTTCAAGAAACAGATAACGAACGACCCAGATGGAATTTTAACCTCATGGAACGATTCTCTCCAT TTCTGCAACTGGGCCGGCATCATCTGCAACACTCAAAAAAGAGTCACCACTCTGTCCTTGTCAAGTCGCTTCCTTGTGGGCACTCTGTCTCCGCATATTG GCAACCTCACCTTCCTCCGAGATATCAACCTCATTAACAACAGCTTCCACGGTCAGATTCCGCCACAAATTGGGAACCTCCGTCATCTTCGAACACTCAA TCTAACAACAAACTTCCTCGCGGGCCAGATTCCCACAAACCTGACGCGTTGCTTAAAGCTCAGGACAATCCTGCTGGGGCACAACAGTCTTGAAGGAAAC ATCCCTGTGGATATTGGCTTGTTGTCAAAGCTTCAACACTTGAGGATAGGAACCAACTATCTGATGGGTCAAATCCCGGCTTCATTGGGGAATCTATCAC GGCTGGTGGAATTTGCTGTTGCATATAACAGTCTGGTTGGAGAAATACCTGAAACCGTGGGTAAGCTCTCCAGGTTAAGTATATTTGTGGTTGGAGTAAA CCAACTCAACGGCACCATTCCCCTCTCACTTTATAACTTGTCGTCCTTGAACACGGTAACATTAGTTTATAACCAGTTTCAAGGTACTATCCCAGAAGAC ATTGGGCTCACTCTCCCAAATCTCTGGAGTTACGGAATCTCCAAAAACTGGATGTCCGGGTCAATCCCGCAATCATTTTGCAATGCTTCAAAATTGTATG GCATCAACATGAACGAGAACAGCTTAACTGGGAGCATTCCAACATGTTTGGGGAGTCTATCAAAACTTTCGACCTTCCATATGGGAGCGAATAATCTTGG AACCAATTCAGCTGGTGACTTTGAGTTCATGAGAGGTTTGAGCAATTGTAGCCTGCTGCAGGATGTTGGAGTCAGCGCCAACAATCTTGGAGGTCCTTTA CCCAACTCTATTAGCAATTTGTCGGTTCAGCTCGATCAATTACTTGTTGGATTCAATCCAATCAAAGGGACTATTCCTGGTGGGTTGGAGAATCTTGTCA ACTTGATGAATGTTGACCTGTCTTATAACCTTTTCACAGGACCAATTCCTTCTTATTTTGGCAAGCTATACAATCTACAAGGACTAGGGCTGAATGGAAA TCAGTTGTCCGGTAAGATTCCATCCTCTTTTGGAAACTTGAGCATATTGAATGAACTTGACATTTCAAATAACCAACTCGAAGGAGCCATTCCTTTCAGT TTGGGAGCCTGCCAACAACTGAACCTGTTGGACCTTTCTGCCAACAAACTCATTGGTGAAATTCCAAAACAAGTTTTCAGCATTTCTTCCCTGTCAGGTG GACTGCATCTATCCAGGAACTCCTTCGTCGGGGGCCTTCCTGATGAAATTTGGAAGTTAGCAAATTTGGAAGTTTTAGATCTGTCTTACAATAATTTGAC CAGGGGAATTCCAGCAACTATTGGGGACTGCAAAAACCTGAAAACGCTTTACTTGCAGAGCAACTCTTTTGATGGGAACATTCCTACAGCTCTAGCCTCC ATTAAAGGCATGGAAGAATTGGATCTTTCCCGGAATAAGTTCACTGGTGAGATCCCATCAGGACTACAGAGCATTCAAGCTCTAAAATATTTGAATCTCT CATTCAATGATCTCCAAGGCAAGGTTCCAGAAAAAGGCGTGTTTGCAAATACAAGTGGGTTGTCTCTGACAGGGAATACCTTGCTTTGTGGTGGTGCCAT CGATCTCCACTTGAAACAGTGCTCAAATGCAAAAACAATTAAGCAGAAGCGAGCAGCCACAGTTAAGCTGACACTTGAAATCGTTTTGCCGTCTCTGACT TTCCTTATGCTATCTGCAATTTTATATCAGTGGAAGCTGTGGAGAGCAAGAAAGGAACCTGCTGTTGGAGATACTATTTTGAGCCACTTTGTGATGGTGT CATACAAAGACCTCCATCAAGGAACTAATGGATTCTCATCTGACAATTTGATTGGATCAGGTGGGTTTGGCATCATCTACAAAGGAGTTTTGGATCAAAT CAGTCCAGGCTTAGTAGCAGTGAAAGTACTCAATATTCAAGAAAATAAAGCTCATAAGAGCTTATTAGCTGAATGCAATGCATTGAAAAATGTCCGACAC AGAAACCTTGTTAGAGTCCTCACCTACTGCTCTAGCTTAGATCACATGGGCAATGATTTCAAGGCCTTGGTTTTTGAGTTCTTGACAAACGGTAGCCTAG AAGACTGGCTGCACTCAGACCGCAATTTGAGCCTGGTTCAAAGGCTTAACATTTTGGTAGATGTGGCATCTGCACTGCACTATCTCCATGATCTATGTGA AACTCCAGTCGTTCATTGTGACTTGAAGCCCAGTAATGTACTTTTGGATGCTGATATGGTTGCTCATGTCGGAGACTTTGGTCTGGCGAGGATTCTGTCA TTCGACAACTCATCTGGAAATGAAAGCAGCAGCATTGGAATCAAAGGAACAATTGGTTATGCCCCTCCAGAGTACGGAATGGGAATGTCGGTATCTGTTG AAGGGGATGTTTATAGCTATGGAATCCTTGTAATAGAGATGTTCACTGGGAAAAGACCTACAGATGAGATGTTCAAAGACGGAACGAATCTTAGGGACTT TGTGAAAGCATCTATTCGAGATGGAATAACATCAGTATTAGACCCATCGATGTCGCTTTCTTTAACTACAGCTGGAGAAAGCAGACTAGTAGGAAACAGG GAAGCTGATGACAATAATCACAGGAGCATTGAAAATGTGAAATTGGATATGTCTAAAATTGGGGAAGAGTGTTTGGTTTCAGTACTTGAAATAGGCCTGG GTTGCTCTGCAGATAGTGCAGGAGAACGTATGAAGACGGCAAATATCGCAAGAAAGATGGCTTCTATCAGAGACGTTTTTGTTGCAGCAGCATCTGTTGG GAGGCGCAGGCCACAACGAATCTGA
AA sequence Show only first row Show all	>Lus10033362 pacid=23172258 polypeptide=Lus10033362 locus=Lus10033362.g ID=Lus10033362.BGIv1.0 annot-version=v1.0 MPSLLNDICFLIPKVRTSFPLHLSKHSLTMKHNEISHFLFLLCPLKLLFLLLSLSASLNPPFQANASGNNLTDRLTLLEFKKQITNDPDGILTSWNDSLH FCNWAGIICNTQKRVTTLSLSSRFLVGTLSPHIGNLTFLRDINLINNSFHGQIPPQIGNLRHLRTLNLTTNFLAGQIPTNLTRCLKLRTILLGHNSLEGN IPVDIGLLSKLQHLRIGTNYLMGQIPASLGNLSRLVEFAVAYNSLVGEIPETVGKLSRLSIFVVGVNQLNGTIPLSLYNLSSLNTVTLVYNQFQGTIPED IGLTLPNLWSYGISKNWMSGSIPQSFCNASKLYGINMNENSLTGSIPTCLGSLSKLSTFHMGANNLGTNSAGDFEFMRGLSNCSLLQDVGVSANNLGGPL PNSISNLSVQLDQLLVGFNPIKGTIPGGLENLVNLMNVDLSYNLFTGPIPSYFGKLYNLQGLGLNGNQLSGKIPSSFGNLSILNELDISNNQLEGAIPFS LGACQQLNLLDLSANKLIGEIPKQVFSISSLSGGLHLSRNSFVGGLPDEIWKLANLEVLDLSYNNLTRGIPATIGDCKNLKTLYLQSNSFDGNIPTALAS IKGMEELDLSRNKFTGEIPSGLQSIQALKYLNLSFNDLQGKVPEKGVFANTSGLSLTGNTLLCGGAIDLHLKQCSNAKTIKQKRAATVKLTLEIVLPSLT FLMLSAILYQWKLWRARKEPAVGDTILSHFVMVSYKDLHQGTNGFSSDNLIGSGGFGIIYKGVLDQISPGLVAVKVLNIQENKAHKSLLAECNALKNVRH RNLVRVLTYCSSLDHMGNDFKALVFEFLTNGSLEDWLHSDRNLSLVQRLNILVDVASALHYLHDLCETPVVHCDLKPSNVLLDADMVAHVGDFGLARILS FDNSSGNESSSIGIKGTIGYAPPEYGMGMSVSVEGDVYSYGILVIEMFTGKRPTDEMFKDGTNLRDFVKASIRDGITSVLDPSMSLSLTTAGESRLVGNR EADDNNHRSIENVKLDMSKIGEECLVSVLEIGLGCSADSAGERMKTANIARKMASIRDVFVAAASVGRRRPQRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10033362 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10033363 [exp]	1.0	0.8565
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	2.0	0.8006
AT4G18425			Protein of unknown function (D...		Lus10013970 [exp]	4.6	0.7515
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	9.2	0.7648
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10001465 [exp]	11.3	0.7478
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	16.1	0.7279
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	17.0	0.6923
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10035970 [exp]	17.3	0.7523
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10014885 [exp]	17.5	0.7163
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	18.5	0.7364

Compare expression of checked genes

Lus10033362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.