Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 696 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 676 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 657 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 644 / 0 EFR EF-TU receptor (.1) AT3G47110 631 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 424 / 5e-132 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 402 / 3e-122 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 378 / 1e-114 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 375 / 3e-112 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 366 / 3e-108 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033330 [exp] 957 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 955 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 954 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 937 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 930 / 0 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 895 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 894 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 884 / 0 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037311 [exp] 790 / 0 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 776 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 776 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 764 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 757 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 751 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 744 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 740 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 739 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 739 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 729 / 0 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033363 pacid=23172129 polypeptide=Lus10033363 locus=Lus10033363.g ID=Lus10033363.BGIv1.0 annot-version=v1.0 ATGAAAACACTCAAACTTTCTGCCGTTCCCATTCTAGTTGTAGACTTCATAATCAGTTTCCTCTTCCTAAACTCGCCATTGCAAGCAAATTGTTCAGGAA ACAATGAGACAGATCGACTTGCCCTGCTGGAGTTCAAAAGTATGATAAATATTGACCCAGATGGAGTTCTGAAATCCTGGAATGATTCAGTCCATTTTTG CAAGTGGCTTGGCGTTGTGTGTGATCCACCTGGCCGGCGAGTCACATCCTTGGTTCTCCATACACACAATCTGGTTGGCAGCCTGTCTCCGTACATTGCC AACTTAACTTCTCTTAGGTACATCAACCTCATCAACAACAGTTTCTATGGTGAGATTCCGCCACAGCTTGGTAACCTAGTTCAACTTCAACACCTGAATT TTAGTGCCAACTCATTTGAAGGTGAGATCCCAGGCAACCTGACTCGTTGCTCCCAGCTAATGTATTTTTTGTTGGAAGCGAATAACTTACGAGGAAACAT CCCAATGGACATTGGATCGTTGTCAAAGCTCAAGTTCCTCAGAGTAGGAACCAACAATCTAACAGGATGGCTCCCTCCTTCCTTGGGCAACCTCTCAATG CTCATTAACTTTGGCGCTGCATACAATAACTTGACCGGAAGTATTCCAGCAAGCATTGGCCGACTATCAAGCTTACGCTCAATCACTCTTGGAATCAACC AACTCTCTGGTTCAATCCCTATATCCTTCTTCAATATCACATCCATCATCACCATTGCAATTCCTTGGAACAATTTACGTGGCCGCTTGCCAGAGGATAT GCACCTTATGATGCCACACCTGGTAAACTTTGCTATTTCAAAGAATGATTTTTTTGCTACCATTCCGGATTCCATATGCAATGTCTCTCAGCTGGAACTT GTGAATATGAATAGAAACAACTTTTTGGGGAAGATTCCTGCTTGCCTTGGTAACCTTAGAGGTCTTAAGTGGCTAGATATAGCTGCAACTAGTCTTGGAA GCAACTCAACAGGCGATTTTACATTTTTAGAATCATTGAGCAACTGCAGCAAGCTACAACGTGTGGGTATTAGCTGGAACAATCTTGGTGGCCCGTTACC CGTATCTCTGGGAAATCTTTCAACCACGCTGACATCCCTTTCTCTCGAGGGCAATCATATAACTGGATCTATCCCTGCGGGTTTGGGGAATCTCTTCAAC TTAATGGATTTGGACATGTCCTACAACCATCTCACAGGCGATATCCCCTCTTATATTGACCAATTTCAGAATCTACAGCTGCTTTCATTGACTGGAAATC AATTGTCAGGTCAGATTCCATCCTCTATGGGCAACCTCACACGATTGTCAGAACTGTATATATCACAGAACAAACTCCGAGGCAACATTCCACCCACTAT TGGGAACTGTCTTCAATTGTGTGCCTTGGATGTTTCAGAAAACAGACTAAGTGGAGCTGTACCCCCCCAGTTAATGAGCCTTTTGTCATTATCCATATTG TTGAACCTGTCAAACAATTTACTCACTGGCAATCTGCCTGCAGAAATTGGGAAGTTGAGAAATGTGAATACAATGGATCTCTCCAATAACCATTTGACAG GGGAAATTCCTAGCACCATTGGGAGTTGCTCGAGTCTGGAATACCTTTATATGCAAAGAAACTTTTTCAATGGTGCCATTCCTCCAGCTTTATCTTCTCT GAAAGGCCTTTTAGAACTAGACCTTTCACAAAACAACTTACGAGGAGAAATTCCTGAAGATCTGTTAGACATCCGCTTAAAGTCTCTGAATCTTTCTTTC AATTATCTACGAGGTAACGTACCACAGAAGGGCATTTTTGCAAACGCAACCATCATCTCGTTGATGGGAAATATGCTTTGTGGAGGTGTACCAGAGCTCC ATTTGCCACAATGCTCAAATAAAACAACAGAGAAAAGAAGGCCTCCAACATTGAAGCGCATAGTCATCATTTTCAGTGCATCTTTAACTGTACTTTTTCT GGTAATTGTGAGCTCTCTACTGAACTACAAGCTGATGAGAAGATCGAACAAGCATGTGAATGTAGAAGATCTACCAGTAGACCATTTCATAAAGGTCTCT TACACAGACCTCTATGAAGCAACCAATGGATACGATTCTGAAACTGTAATTGGGTCTGGTGGTATTGGCACAGTCTACGAAGGGAAACTGAAGCAGATTA AAGCACCAGTGGCTATTAAAGTATTGAACCTGCAACACAAGAAAGCGTATAAGAGACTGGTGGCGGAATGCAACACAACAAGAACCCTCAGGCATAGAAA TCTTGTGAAGATTGTATCTTACTGCTCTAGCACAGACAACCAAGGTAAAGCATTCGGAGCTCTAGTTTACGAATTTGTGGGCAACGGGAGCCTGGATAAA TGGCTGCACGGCAGTATCAGTGATGGCAAAAACCAATCCCACCATCTCAGCCTTCTCCAAAGACTCAACATCGCAATAGACGTGGCATCTGCATTGCACT ATCTTCATGATCTCAGCGTAACGTCAACCATCCACTGCAATTTAAAGCCAAGCAACGTGCTCCTGGACGAAGACATGGTTGCTCACGTAAGCGATTTTGG TCTAGCGAGACTACTTGCACCATCCGAAAAACACGCAAGCACTATTTGCCTACAAGGGATGGTTGGCTATGCTCCTCCAGAGTATGGAATGGGCTCCACG GCATTGAAGGAAGGGGATGTGTACAGCTACGGGATCCTATTGCTGGAAATGCTTTCAGGGAAAAGACCAACAGACGATATGTTCAAGGACGGTATGAATC TCCGTGAGTTGGTGAAGGCTGCATTTCCGGAAGAACTTCCAATGTTGGTTGATCCATCAACGTTTATATACGGAGAAGCAGAGGGAATTGACGAAGAGAC AGTTGAACCGGGAGAAACCACGGAAGCGACCATTAAAGAGAAGCGGGGGATGACGGAGAGGAAGAAGGTGGAAGATTGTTTGAAATCCTTGCTTGAGTTG GGAGTCAGGTGCTCAGCTGAATCGCCGAGGGAGCGGTTGAACATGGAGGAGGTCACGAGGAAATTGCATTCCATCAGGATTGCCTTTCTTGCGAAGTCTG TCTCGCCGCAGATGGCAGCTGGCGGGAGCGCCCGGCAGACCATTTAG
AA sequence Show only first row Show all	>Lus10033363 pacid=23172129 polypeptide=Lus10033363 locus=Lus10033363.g ID=Lus10033363.BGIv1.0 annot-version=v1.0 MKTLKLSAVPILVVDFIISFLFLNSPLQANCSGNNETDRLALLEFKSMINIDPDGVLKSWNDSVHFCKWLGVVCDPPGRRVTSLVLHTHNLVGSLSPYIA NLTSLRYINLINNSFYGEIPPQLGNLVQLQHLNFSANSFEGEIPGNLTRCSQLMYFLLEANNLRGNIPMDIGSLSKLKFLRVGTNNLTGWLPPSLGNLSM LINFGAAYNNLTGSIPASIGRLSSLRSITLGINQLSGSIPISFFNITSIITIAIPWNNLRGRLPEDMHLMMPHLVNFAISKNDFFATIPDSICNVSQLEL VNMNRNNFLGKIPACLGNLRGLKWLDIAATSLGSNSTGDFTFLESLSNCSKLQRVGISWNNLGGPLPVSLGNLSTTLTSLSLEGNHITGSIPAGLGNLFN LMDLDMSYNHLTGDIPSYIDQFQNLQLLSLTGNQLSGQIPSSMGNLTRLSELYISQNKLRGNIPPTIGNCLQLCALDVSENRLSGAVPPQLMSLLSLSIL LNLSNNLLTGNLPAEIGKLRNVNTMDLSNNHLTGEIPSTIGSCSSLEYLYMQRNFFNGAIPPALSSLKGLLELDLSQNNLRGEIPEDLLDIRLKSLNLSF NYLRGNVPQKGIFANATIISLMGNMLCGGVPELHLPQCSNKTTEKRRPPTLKRIVIIFSASLTVLFLVIVSSLLNYKLMRRSNKHVNVEDLPVDHFIKVS YTDLYEATNGYDSETVIGSGGIGTVYEGKLKQIKAPVAIKVLNLQHKKAYKRLVAECNTTRTLRHRNLVKIVSYCSSTDNQGKAFGALVYEFVGNGSLDK WLHGSISDGKNQSHHLSLLQRLNIAIDVASALHYLHDLSVTSTIHCNLKPSNVLLDEDMVAHVSDFGLARLLAPSEKHASTICLQGMVGYAPPEYGMGST ALKEGDVYSYGILLLEMLSGKRPTDDMFKDGMNLRELVKAAFPEELPMLVDPSTFIYGEAEGIDEETVEPGETTEATIKEKRGMTERKKVEDCLKSLLEL GVRCSAESPRERLNMEEVTRKLHSIRIAFLAKSVSPQMAAGGSARQTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10033363 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10033362 [exp]	1.0	0.8565
AT1G08590			Leucine-rich receptor-like pro...		Lus10027951 [exp]	4.0	0.7907
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10000605 [exp]	7.1	0.7466
AT4G18425			Protein of unknown function (D...		Lus10013970 [exp]	17.5	0.7082
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	18.1	0.7798
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10027207 [exp]	18.3	0.7250
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	18.5	0.6972
AT5G07720			Galactosyl transferase GMA12/M...		Lus10019076 [exp]	23.5	0.7578
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	23.7	0.6985
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	26.5	0.6846

Compare expression of checked genes

Lus10033363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.