Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38540 81 / 3e-16 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G05320 76 / 8e-15 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G29720 60 / 2e-09 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT2G35660 59 / 2e-09 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT4G15760 48 / 8e-06 MO1 monooxygenase 1 (.1.2) AT4G15765 48 / 8e-06 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034816 [exp] 226 / 2e-68 AT5G05320 284 / 7e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034838 [exp] 151 / 7e-41 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 149 / 5e-40 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 147 / 5e-39 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033366 [exp] 145 / 1e-38 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10011254 [exp] 125 / 5e-31 AT1G61330 84 / 6e-17 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10034814 [exp] 99 / 1e-24 ND / Lus10000273 [exp] 96 / 2e-23 ND / Lus10034733 [exp] 85 / 3e-17 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307500 [exp] 145 / 2e-38 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 132 / 8e-34 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003200 [exp] 130 / 1e-33 AT4G38540 268 / 2e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 126 / 1e-31 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 123 / 7e-31 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 122 / 1e-30 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 122 / 3e-30 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 122 / 3e-30 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176950 [exp] 79 / 1e-15 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 74 / 6e-14 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033364 pacid=23172194 polypeptide=Lus10033364 locus=Lus10033364.g ID=Lus10033364.BGIv1.0 annot-version=v1.0 ATGATGAACAACATTGAGATATCAAAGTTTAGCTCAATGTGGCATGCTCCCAAATGCACTCAAAGAGGAACATCTAGTTCCATAGCCAAGGAGAGAGCCA ACAACCACACTAAATGCAAGGACTTATTGCCATTGCTGAACGATATACTGAAGGAGATCTTGGGCTTTTTAGACGTCAGACAACTAGTACAGTTCAATAT CGTAGCCAAGCAGTTCAGGGTGACATCTGACCTCATATTCCAGTTCAAAACCCTTGAGACTCTCCGTATGGTGTATGTTGATATAGGGTCACCAAGCAAC AATTTTCAAGTCACCGAGTTTAAATTTCTCAAGATCAACTCGATAAAGAAGGTTGTGCTCAAATTTGGGGAGATGTACTTAAAGAATAGGTTATATTCTT TCATACCGGGCAAAGAAATCAACTTGACTTTGAAAGGATCACAGCATCACAATCTGTTCACGATAACTTTAATCACTTCGACTAGCCAATTAAATTGGCA GACTGCGCGACAAGCAACTAATGTGCGGCGCATACGCGTGGAAGCAAACAATGACGCCATGCTTCGAGGAAGAGGACGTGCAACCACCACCAGTACAATG GACAACAACACATACTTCTCTAACAAACCGGGCGCTAGCCTCGAGCTACCCGTATTTGGAGCAATTGAACCTTATTGGTTTTCACTTCGAATCAAAGGAG ATGAAATTGATATGCTACTTCCTCTGAAACGGAGACAAGTTTGGCAATTTTCTCAGCCTCGTCGTGCCACTGGAGGCCAATCAGGCCCCATGAGACCATG TTGTGACGGATTGCATTCAGTGGTTGCTAAATGGCTAGGAGTACCTGTCCCGGTACATTCGGGGCGGTCCGTGTTTCGAGGGATAGCGGTTTACCCTGGA GGACACGGACTCGGAAGTTCGTACCAACAGTTTGTGGATGCGGGAAACAAAAGTGGGATTACTCCTTTGAATGATACGGAAGTTTACTGGTTATTGACTT GTCACAGTGGCAACGATAACGACCCAATCGAAACAATAGAGGTCATCAAACAGCATACATCAGGCTTCCCACCGGTCTTCCTCGACGTGGTTCGCAAAAC CAACCCAGCATCCGTATCATGGGTGCCATTAATGTTCTGGAATCCGTGGAGCATTGTAGTCAGGAAACCTAAGCAAAGGGAATGTCGTCGTGGCAGGGGA TGCTATGCACCCAATGACGCCCGATCTCGGACAAGGAGGCGGGTCCGCTTTGGAAGACGCGGTGGTGTTAGGGAGACAGGTTGGGAATCACCTGATAGGT GGAGCGAAGAAAGAGGTGGTGACAGAGGAGATGGGTGGAGTTTTGAAAGGGTATGTGAAGGAACGGAGATGGCGCGCGGCGGGATTGGTGGCGGGGTCGT ATGTGGCAGGGTGGGTGCAGCAGAGTGGGAGTAA
AA sequence Show only first row Show all	>Lus10033364 pacid=23172194 polypeptide=Lus10033364 locus=Lus10033364.g ID=Lus10033364.BGIv1.0 annot-version=v1.0 MMNNIEISKFSSMWHAPKCTQRGTSSSIAKERANNHTKCKDLLPLLNDILKEILGFLDVRQLVQFNIVAKQFRVTSDLIFQFKTLETLRMVYVDIGSPSN NFQVTEFKFLKINSIKKVVLKFGEMYLKNRLYSFIPGKEINLTLKGSQHHNLFTITLITSTSQLNWQTARQATNVRRIRVEANNDAMLRGRGRATTTSTM DNNTYFSNKPGASLELPVFGAIEPYWFSLRIKGDEIDMLLPLKRRQVWQFSQPRRATGGQSGPMRPCCDGLHSVVAKWLGVPVPVHSGRSVFRGIAVYPG GHGLGSSYQQFVDAGNKSGITPLNDTEVYWLLTCHSGNDNDPIETIEVIKQHTSGFPPVFLDVVRKTNPASVSWVPLMFWNPWSIVVRKPKQRECRRGRG CYAPNDARSRTRRRVRFGRRGGVRETGWESPDRWSEERGGDRGDGWSFERVCEGTEMARGGIGGGVVCGRVGAAEWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033364 [exp]	0	1
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10040501 [exp]	1.4	0.9982
					Lus10025477 [exp]	2.0	0.9960
AT2G15220			Plant basic secretory protein ...		Lus10026576 [exp]	11.0	0.8703
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	11.5	0.9704
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	13.4	0.9692
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	15.0	0.9692
AT3G50150			Plant protein of unknown funct...		Lus10005799 [exp]	16.4	0.9692
					Lus10024141 [exp]	17.7	0.9692
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10016377 [exp]	18.1	0.7490
AT5G59190			subtilase family protein (.1)		Lus10040254 [exp]	19.0	0.9692

Compare expression of checked genes

Lus10033364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.