Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27300 681 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 658 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 634 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 631 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 612 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 596 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11410 594 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 575 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G21390 574 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61500 556 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014808 [exp] 871 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 782 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 771 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 764 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 763 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 761 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 756 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 754 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 737 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G412300 [exp] 897 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 884 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126201 [exp] 874 / 0 AT4G27290 833 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 870 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412400 [exp] 869 / 0 AT4G27290 871 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412100 [exp] 863 / 0 AT1G11330 600 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.001G413800 [exp] 862 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128900 [exp] 860 / 0 AT4G27290 834 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128700 [exp] 854 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413300 [exp] 854 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10033365 pacid=23172211 polypeptide=Lus10033365 locus=Lus10033365.g ID=Lus10033365.BGIv1.0 annot-version=v1.0 ATGGTTATTATGATCATCACCCCACTTTCAGCAGCTCTTCTAATTCCCACTCTCTACTTCTATCTCTTCTCGGCCGCCTTTGCCGCCGACACCATAACTA CCTCTCTGCCGCTCCTAGACGACGGCAGCACTCTCAATTCCTCCGACGGCATCTACCAGATGGGATTCTTCACCCCACCAGGGAGCAGCAATCTCAACAA CCGCTACTTGGGAATTTGGTACAGAGAAATCCCCGTCATGACTGTCGTTTGGGTAGCCAACCGCAACAAACCCGTTCCCCCCGCCGTCGCCAATTCTTCC TCTCCTCTCTCAGCCCTCCTTCAGCTCACCGATGCCGGAACCCTCCTCCTCCTCGATCGAGTCAACGGCACCACAATCTGGTCTTCTTCTTCTTCCTCAT CAGTCAGTAGAGGCAGTGGTAATAATAATCCAGTGGCTCAGCTTCTCAATTCGGGAAACCTGGTGGTGAAACCTCGGGAGGAGGAGGAAAACCTAGACAA TTCAATCTGGCAGAGCTTCGACTACCCTACCGACACATTCCTCCCCGGGATGAAACTCGGGAGGAACCTAATCACAGGTCTGAACCGTCGGATTACATCC TGGGCGTCCCCTGAAGATCCATCTTCAGGGAATTTCACGTGCGGAATGGAACTCGGAGGGTACCCGGAACTCGTCGAGCGACGAGACGGAATCCAAACGT TCCGTACGGGATATTGGACCGGAGAGAGTTTCACCGGTACGCCTCATCTGAACCCTAACCCTGTCTACACTTACAATTTCGTCTTCACCGACGAGGAAAC CTACTACATCTTCCATCTCCGAAACGACTCCATCGTTTCCAGGATGGTCATCACCCCGAGCGGCCTCATTCAGAGGTACACGTGGCAAGGGAGCAAACAA GGGTGGATGATCTACCTGACGGCACAAAACGACAACTGCGACAGGTACGCTCTATGCGGAGCTTACGGAAGCTGCGATATCGAAAGCTCTCCAAGCTGCA GCTGTCTTGAAGGGTTTGTTCCGAAAGATCAAAAGGAGTGGGATATGGTGGATTGGAGCAGTGGGTGTGTGAGGAAGACACAGTTGAATTGTTCTGGAGA TGGGTTCGTGAAGCATTCTGGAATAAAGATGCCCCAAACGGCGAATTCGTCTTGGTTTAATGTGACCATGACTTTAGAAGATTGTAAAGAAGCTTGCATC AGGAATTGTTCTTGTACAGCTTATGCCAATTTGGACACCAGGAATGGAGGGAGTGGCTGCTTGATTTGGTTTACTGACTTGTTGGATATCAGAGTCTTGT ATGATAATGATCAGGATCTTTACATCAGGATGGCTGCTTCTGATATAGATCAGAGCGGCCTTGTGAAGAAGAGTAACAAGGTGAAGTCTAAGAAGAAATT TATATGGATCATCTTGGCCAGCGTAGGAGCGGTGTTAGCAGCAGTTGGATTCATCGTTTGGTTTAAGAGAAAACAGCAGCATCATCAACAACAACATAAT GCTTCAGAAGTTTGTAAAGATTTTTCGTGCTGTTTTGGTACCAATTATAAGAGAAGTGACAAAGAAAATATAGAGTTGCCATTGTTTGATCTGGCTACCA TTGCTTCTGCAACCAACAACTTCTCTTCTAAGAATGTCCTTGGCCAGGGCGGATTCGGACGTGTTTATAAGGGAATACTAAAAGATGGACAGGAAGTTGC AGTGAAGAGGATGTCAAAGGATTCAAATCAAGGAGCGGAGGAATTCAAGAACGAAGCAATCCACATTGCCAAACTTCAACATCGCAATTTGGTTAGGCTA CTCGGATGCTGCATTCAACGTGATGAAAGAATGCTTGTGTACGAGTTCATGCCCAACAGAAGCTTGGACTTCTTCATTTTTGATACAACTCAAAGCCAGC TACTTGATTGGCCTAAGCGATACAACATCATCAAGGGGATTGCTAGGGGAATTGTGTATCTTCACCAAGACTCGAGGTTGAGAATAGTACATCGTGATCT CAAAGCCAGCAATGTATTGTTAGATTACGAGATGAACCCAAAGATCTCGGATTTCGGGCTGGCAAGAACTTTTGTTGGGAATGAATCCGAAGGAAATACA AGAAACGTTGTGGGGACATATGGTTACATGTCACCGGAGTACGTCATAGACGGAGTTTACTCCATCAAATCCGACGTGTTCAGCTTCGGAGTGATGGTCT TGGAGGTAATCCACGGGGAAAGAAACAGGAGATTTCATCATCCCGGTCATGATCTCAACCTCCTTGGCCATGCGTGGCACTTGCACATGGAAGGTAGATC TTTCGATCTGATAGACGCGACAATGGCTGAAAGGTGTGACCGACACGAGGTGTTGAGGTTGGTTCACATCGGACTGCTATGCGTGCAGAAGAAACCGGAC GATCGACCGAGCATGGCGGAAGTGGCTATTATGATAGGAGGGGACGGAGAGTTGCCGGAGCCGAAACTACCAGGCTTCTTTACGGAAAGGAGTGTGACGG AAGGATGGACTTCATCTTCGACTTCAAGTGGTAATAGAGGAACATGTTCCAATTCCATGAGTGTTACTATGTTACACCCTAGATAA
AA sequence Show only first row Show all	>Lus10033365 pacid=23172211 polypeptide=Lus10033365 locus=Lus10033365.g ID=Lus10033365.BGIv1.0 annot-version=v1.0 MVIMIITPLSAALLIPTLYFYLFSAAFAADTITTSLPLLDDGSTLNSSDGIYQMGFFTPPGSSNLNNRYLGIWYREIPVMTVVWVANRNKPVPPAVANSS SPLSALLQLTDAGTLLLLDRVNGTTIWSSSSSSSVSRGSGNNNPVAQLLNSGNLVVKPREEEENLDNSIWQSFDYPTDTFLPGMKLGRNLITGLNRRITS WASPEDPSSGNFTCGMELGGYPELVERRDGIQTFRTGYWTGESFTGTPHLNPNPVYTYNFVFTDEETYYIFHLRNDSIVSRMVITPSGLIQRYTWQGSKQ GWMIYLTAQNDNCDRYALCGAYGSCDIESSPSCSCLEGFVPKDQKEWDMVDWSSGCVRKTQLNCSGDGFVKHSGIKMPQTANSSWFNVTMTLEDCKEACI RNCSCTAYANLDTRNGGSGCLIWFTDLLDIRVLYDNDQDLYIRMAASDIDQSGLVKKSNKVKSKKKFIWIILASVGAVLAAVGFIVWFKRKQQHHQQQHN ASEVCKDFSCCFGTNYKRSDKENIELPLFDLATIASATNNFSSKNVLGQGGFGRVYKGILKDGQEVAVKRMSKDSNQGAEEFKNEAIHIAKLQHRNLVRL LGCCIQRDERMLVYEFMPNRSLDFFIFDTTQSQLLDWPKRYNIIKGIARGIVYLHQDSRLRIVHRDLKASNVLLDYEMNPKISDFGLARTFVGNESEGNT RNVVGTYGYMSPEYVIDGVYSIKSDVFSFGVMVLEVIHGERNRRFHHPGHDLNLLGHAWHLHMEGRSFDLIDATMAERCDRHEVLRLVHIGLLCVQKKPD DRPSMAEVAIMIGGDGELPEPKLPGFFTERSVTEGWTSSSTSSGNRGTCSNSMSVTMLHPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	0	1
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	2.0	0.9682
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	2.4	0.9743
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	2.4	0.9670
					Lus10026056 [exp]	2.6	0.9602
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	4.2	0.9586
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10037970 [exp]	4.8	0.9516
AT5G61820			unknown protein		Lus10017316 [exp]	6.3	0.9642
AT2G29150			NAD(P)-binding Rossmann-fold s...		Lus10010877 [exp]	6.5	0.9567
AT2G23755			unknown protein		Lus10019660 [exp]	6.9	0.9594
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	6.9	0.9630

Compare expression of checked genes

Lus10033365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.