Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G05320 280 / 6e-91 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15760 238 / 1e-74 MO1 monooxygenase 1 (.1.2) AT2G35660 233 / 1e-72 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT2G29720 209 / 2e-63 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15765 138 / 7e-38 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G67030 77 / 4e-15 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) AT5G11330 63 / 1e-10 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT3G10230 47 / 2e-05 AtLCY, LYC lycopene cyclase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034817 [exp] 776 / 0 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034838 [exp] 555 / 0 AT5G05320 285 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033385 [exp] 550 / 0 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034816 [exp] 491 / 6e-173 AT5G05320 284 / 7e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 299 / 2e-98 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034475 [exp] 289 / 3e-94 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019729 [exp] 287 / 7e-94 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10025068 [exp] 279 / 3e-90 AT5G05320 410 / 1e-141 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016398 [exp] 261 / 7e-82 AT4G38540 358 / 1e-119 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307500 [exp] 497 / 3e-176 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 487 / 5e-172 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 476 / 2e-167 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 459 / 2e-161 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003200 [exp] 452 / 7e-159 AT4G38540 268 / 2e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 450 / 1e-157 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 448 / 8e-157 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 447 / 3e-156 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176950 [exp] 271 / 2e-87 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 267 / 6e-86 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10033366 pacid=23172230 polypeptide=Lus10033366 locus=Lus10033366.g ID=Lus10033366.BGIv1.0 annot-version=v1.0 ATGGATCAGATTCCAGTGTGTAATAATATAATGGAACAAGAACAAGTGGTGATTGTTGGAGCCGGGATAGCCGGCCTTGCAACGGCGGTGGCGCTGCACA GAGTAGGAATCCCATCCCTTGTCCTTGAGAGATCTGAAGAGCTCCGTACCACCGGAGCAGCACTCACTCTGTTCCCCAATGCCTGGCTAGCTCTCGATGC ACTCGGCGTTTCCCACAAGCTCAATTCCCTTTACCCTCCTTGCTCCCGCGGCTCCGTCACCGACGTGGCCACTGGCGCCGTACAGGACGTCTCCTTCCGC CGGGGAAATGGAAACGGACCAAGGCCACTCCACCGTAAGGCACTGTTGCAGGCTCTGGCCGAGGAGTTACCCACAAACTCTATTCGATTCAGCTCTCATC TCACTTCCATTGAACAAGGAGACGATTCCACTACGGCGGTTGTACATTTGAAAGATGGAACAAGCATCAAGTCGAAAGTTTTGATAGGATGCGACGGATT GCATTCAGTGGTGGCACAATGGCTAGGGCTTTCAGCTCCGGTACATTCGGGTCGATCGGCGGTGAGGGGGCTAGCGTTTTACCCTCAGGGCCATGAATTT GGGGACAGCATCCGCCAATTTGTGGATTCAGGGAAAAGGGCCGGTTTCGTCCCCTTGAATGACAAAGAACTTTACTGGTTCCTAACTTGCCAAGGTGGTC AGTTCACGTACGACCCAAAGGAAATCCAAGCGGAGGTGCTGGAAAACTACGCAGCAGACTTCCCACAAGTCTACCTAGACGTGGTTCGCCACGCGGACCT CTCGTCCATGTCGTGGGCACCATTGATGCTGAGATATCCGTGGAACATCGCTGCAGGAGGAAGGCTGAGCAGAGGGAATGTCACGGTGGCTGGAGACGCG ATGCATCCGATGACCCCTGATCTTGGTCAGGGAGGGGGCTCTGCGCTGGAGGATGCCGTGGTATTGGGTAGGCACATTGCGTTGGCAGGGGAGGATGTTG GTAAAGCTTTGGATGGGTATGTGAAGGAGCGGAAATGGAGGGCGGCAGGGTTGGTGGCCGGGGCATATATAGCAGGGTGGGTTCAGCAAGGTGGAAGTAA CTGGTGGAGACGACTTGTGAGGTTTGTTTACTATAAGTACCTGATGAGGGCAGTGGTAAAGTTTGTCCAGTATGATTGTGGGAAGCTTCCTCAGCCTGGA AAATTGGATTGA
AA sequence Show only first row Show all	>Lus10033366 pacid=23172230 polypeptide=Lus10033366 locus=Lus10033366.g ID=Lus10033366.BGIv1.0 annot-version=v1.0 MDQIPVCNNIMEQEQVVIVGAGIAGLATAVALHRVGIPSLVLERSEELRTTGAALTLFPNAWLALDALGVSHKLNSLYPPCSRGSVTDVATGAVQDVSFR RGNGNGPRPLHRKALLQALAEELPTNSIRFSSHLTSIEQGDDSTTAVVHLKDGTSIKSKVLIGCDGLHSVVAQWLGLSAPVHSGRSAVRGLAFYPQGHEF GDSIRQFVDSGKRAGFVPLNDKELYWFLTCQGGQFTYDPKEIQAEVLENYAADFPQVYLDVVRHADLSSMSWAPLMLRYPWNIAAGGRLSRGNVTVAGDA MHPMTPDLGQGGGSALEDAVVLGRHIALAGEDVGKALDGYVKERKWRAAGLVAGAYIAGWVQQGGSNWWRRLVRFVYYKYLMRAVVKFVQYDCGKLPQPG KLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	0	1
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10010570 [exp]	1.4	0.9746
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	4.0	0.9614
AT5G57010			calmodulin-binding family prot...		Lus10013526 [exp]	4.9	0.9610
AT1G16670			Protein kinase superfamily pro...		Lus10023510 [exp]	6.0	0.9503
AT4G33050		EDA39	embryo sac development arrest ...		Lus10014872 [exp]	9.2	0.9606
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	9.2	0.9587
AT3G58480			calmodulin-binding family prot...		Lus10013759 [exp]	9.2	0.9586
AT2G31945			unknown protein		Lus10013740 [exp]	11.4	0.9511
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10035929 [exp]	15.5	0.9431
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10041986 [exp]	16.0	0.9356

Compare expression of checked genes

Lus10033366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.