Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51610 571 / 0 Cation efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034818 [exp] 832 / 0 AT1G51610 627 / 0.0 Cation efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G251300 [exp] 612 / 0 AT1G51610 615 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10033367 pacid=23172122 polypeptide=Lus10033367 locus=Lus10033367.g ID=Lus10033367.BGIv1.0 annot-version=v1.0 ATGCAAACATCATACAGCCTTCTCTCCCGCCTTCGACGCCCCCACAAGCATAATCCTCCCTTTCTTTTCTCTTCTTCCTCACCTTTTACCTTTCGGGATT CGGTTTCCCAGTCACCAGTATGCTGCCACCGACGGGACGGCAGTACTGAAGCTTGTTCAGAGGAACGTGATTTCGCAAGACCAAAACCTACCCTTTATTC GCCTTCTTCTTCTTCTTCTTCTTCTTCCAACCAGTCTCGCCGTGGGTTCCACTCGTTTGGGTTATCCAGAGTTTCTGTCTCTCTTCCGGGCTTGGTTTCG TCAATTGGTGATCACAAGCACCGGAATTTTCTCCTTGCAGTTCATGGCCGTGGTGAGTTCCGGTGTTTTGCAGCTTCTTTCAATTTTCTTGATGAACTGG ATGGTTCAGCTTATCTAATTACTGGATTTTTGTTTGCAACAGGATTTTTCACGAGGGCAAAGCAAGTTAAGCAGATTGCAATAAGTGATCAGCACAGCCA GCGAGCAGTCACAACAGCACTATGGTGTAACTTTCTTGTCTTTTCTCTCAAGTTAGATGTTAATCGTGCACTTCTTGCTTATGGTCTAAGAAGCTCAAGG CGTGCCCCAGATGCTCTTCATCCTTATGGCTATTCCAAAGAACGGTTTGTGTGGTCCTTGATATCTGCTGTCGGTATCTTTTGCCTGGGTTCTGGCGCTA CAATTGTTAATGGAGTTCAGAACTTGTGGAGTTCGCAGCCCCCTGGAAACATTGAATATGCAGCTTTGGTGCTTGGTGGCTCGTTTATAATTGAAGGTGC TTCTCTTCTTGTCGCCATACAAGCGGTCAAGAAAGGTGCAGCTGCAGAGGGTATGGCCATCCGAGACTATGTATGGCGTGGTCATGATCCCACAGCTGTT GCGGTGATGACAGAGGATGGTGCTGCAGTAACTGGATTGGTTATTGCTGGAGCTTCATTGGTTGCAGTGAATGTCACAGGGAATCCAATTTATGATCCAA TAGGTTCAATCATAGTTGGGAATCTGTTGGGAATGGTAGCTATTTTCCTCATCCAAAGGAATAGGCATGCTTTGATTGGTAGAGCAATGGATGACAATGA TATGAAGAAGGTCCTTCATTTCTTAAAAAACGACCCGGTTGTGGATTCATTATATGATTGCAAAAGTGAGGTGATTGGGCCTGGATTTTTCAGATTTAAG GCAGAAATAGATTTTAATGGAGAGATGGTGGTGCAGAATTATCTAAATAGGATAGGACGGGAAGAGTGGGCGAGACAGTTCCGGGATGGTGCAAAGATGA AGGATGATGCTGCGCTTCTCAAGGTCATGTCCATATATGGTGAGGAGCTGGTGACAGCTCTAGGAAGCGAAGTAGATAGACTTGAAAAAGAGATACAAGA GATCGTCCCTGGCATCCGGCATGTCGACATCGAGGCACACAACCCAATAGAACCCCAATCCACAACCAGTCAATAA
AA sequence Show only first row Show all	>Lus10033367 pacid=23172122 polypeptide=Lus10033367 locus=Lus10033367.g ID=Lus10033367.BGIv1.0 annot-version=v1.0 MQTSYSLLSRLRRPHKHNPPFLFSSSSPFTFRDSVSQSPVCCHRRDGSTEACSEERDFARPKPTLYSPSSSSSSSSNQSRRGFHSFGLSRVSVSLPGLVS SIGDHKHRNFLLAVHGRGEFRCFAASFNFLDELDGSAYLITGFLFATGFFTRAKQVKQIAISDQHSQRAVTTALWCNFLVFSLKLDVNRALLAYGLRSSR RAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGVQNLWSSQPPGNIEYAALVLGGSFIIEGASLLVAIQAVKKGAAAEGMAIRDYVWRGHDPTAV AVMTEDGAAVTGLVIAGASLVAVNVTGNPIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDNDMKKVLHFLKNDPVVDSLYDCKSEVIGPGFFRFK AEIDFNGEMVVQNYLNRIGREEWARQFRDGAKMKDDAALLKVMSIYGEELVTALGSEVDRLEKEIQEIVPGIRHVDIEAHNPIEPQSTTSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	0	1
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10025019 [exp]	1.0	0.8019
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10032500 [exp]	5.2	0.7383
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	6.2	0.7925
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	12.2	0.7537
AT5G16610			unknown protein		Lus10010975 [exp]	16.4	0.7253
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10042997 [exp]	16.8	0.7948
AT5G09880			Splicing factor, CC1-like (.1)		Lus10000826 [exp]	20.2	0.7462
AT1G61470			Polynucleotidyl transferase, r...		Lus10007771 [exp]	21.4	0.7355
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034065 [exp]	21.6	0.6875
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	26.1	0.7208

Compare expression of checked genes

Lus10033367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.