Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51590 736 / 0 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT3G21160 712 / 0 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT1G30000 293 / 2e-90 MNS3 alpha-mannosidase 3 (.1) AT1G27520 185 / 9e-51 Glycosyl hydrolase family 47 protein (.1) AT5G43710 173 / 2e-46 Glycosyl hydrolase family 47 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034820 [exp] 928 / 0 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10035727 [exp] 840 / 0 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10037312 [exp] 829 / 0 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10042830 [exp] 294 / 4e-91 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10042143 [exp] 183 / 4e-50 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10028127 [exp] 176 / 4e-49 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1) Lus10021888 [exp] 176 / 2e-47 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10041170 [exp] 171 / 2e-45 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10004233 [exp] 69 / 4e-12 AT1G27520 515 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007500 [exp] 793 / 0 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.018G141100 [exp] 702 / 0 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.004G132300 [exp] 294 / 1e-90 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1) Potri.015G071400 [exp] 187 / 1e-51 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 179 / 2e-48 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.012G076600 [exp] 132 / 3e-32 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF01532 [flax] [poplar] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Lus10033368 pacid=23172164 polypeptide=Lus10033368 locus=Lus10033368.g ID=Lus10033368.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGCAGCAGATCCTCGTCGTCATCTTCCTCGAAATGGAGGTATTGCAACCCTGCTTATTACCTCAAGCGGCCCAAGCGATTGGCTTTCCTCT TCTTTGCCTTCGTTTGCGCCACTCTGCTCGTTTGGGATCGCCATACTCTCATCCAGGAGCACGAGTTCCGAGCTCTTGCAAAGTGGTTCCTTCTTCAATC TGATGGTTTCTGTCCAACTTTGCAGGTGGAAGTTGAGAAGTTAAATGAAGAACTGAACCAAATAAAATCGATGTTTACTGAATATATTTTTGAGAGATCT TCTGAGACTGAAAATAGTTTGCTTCTTCAGCTAGAAGAGTTAAAGGGTACTCATGGGGATGAAGTCAGCTCAGTGATTGAGAAATCTTCCAAAGTCACCC CGAAGGTTATTCCTGAGGACCCTGTTAGTATTCACCGAAGAGAGAAAGTGAAAGAAGCCATGATTCATGCTTGGAGTTCGTATGAAAAATATGCATGGGG TCATGATGAACTTCAGCCTCAATCGAAGAATGGTGTTGATAGCTTTGGTGGTCTTGGAGCAACATTGATAGATGCTCTTGATACCTTATATATAATGGGC CTGGATGAGCAGTTCCAAAGAGCTAGAGAGTGGGTTGCAAATTCATTGGATTTCAATAAGGATTATGATGCTAGCGTGTTTGAGACAACAATAAGAGTTG TAGGGGGTCTACTCAGTGCTTATGATCTTTCTGGCGACAAACTTTTCATTGACAAGGCTAAAGACATCGCTGATAGATTGTTGCCTGCATGGGATACACC TACTGGCATTCCTTATAACATTATCAACTTGGAACACGGAAATCCTCACAACCCTGGTTGGACCGGTGGTTCTAGTATTCTTGCAGATTCTGGTACCGAG CAGCTTGAATTTTTTGCTCTCTCTCAAAGGACAGGAGACCCAAAGTACCAACAAAAGGCTGAAAAGGTTATACTGGAGCTCAATAAAACCTTCCCTGCTG ATGGCCTTCTACCTATCTATATAAGCCCTGATACGGGAACTGGATCAATCTCCACAATAACTTTTGGCGCGATGGGTGACAGGCAGGTTCTTGACTTTTA CGAGTATCTGCTCAAGGTGTGGATTCAAGGAAATAAAACTTCAGCTGTGAAACTTTACAGCATGCTTTGCTCCAGGAATGTTGGCTCTCCAGTAATTTGG GCTCTGGGATCAGCTGGTTATGAGCCTGCCGAGTCTAAGAAATTTCTCTCACTCGCAGAGGAGGTAGTCATGGCTTTTCCTGTGGACCGTACTCTTGCTT GGACTTGTTACAACTTCTATCAATCAACACCTACAAAACTGGCTGGAGAGAACTATTTTTTCCGATCTGGAGAGGATATGAGTGTTGGCACATCATGGAA CATATTGAGGCCAGAAACTGTGGAATCGCTGTTTTACTTATGGCGTTTAACGGGGAACAAGACATACCAGGAGTGGGGTTGGAACATATTCCAAGCATTT GAGAAGAACTCACGCGTTGAAGGCGGATATGTTGGACTGAAAGATGTGAACACTGGGATCAAAGACAACATGATGCAGAGCTTTTTCCTCGCGGAGACGC TAAAGTATCTATACCTTCTTTTCTCGCCGTCATCTGTGATCTCATTGGACGAGTGGGTTTTCAATACGGAAGCTCACCCTTTGAGAATAGTGGCCCGGCA AGATGTGGAGAGTAGTGATAGTGGAAAGAGGGAAGACAAATTGGATGAGCCAACTCAGCTGACGCAGGCTGCAGGAAGGAATCCCTTCGCCAAATCTCCT TCTACCTCAACTCAGAAGAAATTAGAAAACCAGCTTCCGGCGGTTGGAAACATTTCATCTATGAAAACCCGTCTAGGAATCGAAACCCAGTGA
AA sequence Show only first row Show all	>Lus10033368 pacid=23172164 polypeptide=Lus10033368 locus=Lus10033368.g ID=Lus10033368.BGIv1.0 annot-version=v1.0 MGRSSRSSSSSSSKWRYCNPAYYLKRPKRLAFLFFAFVCATLLVWDRHTLIQEHEFRALAKWFLLQSDGFCPTLQVEVEKLNEELNQIKSMFTEYIFERS SETENSLLLQLEELKGTHGDEVSSVIEKSSKVTPKVIPEDPVSIHRREKVKEAMIHAWSSYEKYAWGHDELQPQSKNGVDSFGGLGATLIDALDTLYIMG LDEQFQRAREWVANSLDFNKDYDASVFETTIRVVGGLLSAYDLSGDKLFIDKAKDIADRLLPAWDTPTGIPYNIINLEHGNPHNPGWTGGSSILADSGTE QLEFFALSQRTGDPKYQQKAEKVILELNKTFPADGLLPIYISPDTGTGSISTITFGAMGDRQVLDFYEYLLKVWIQGNKTSAVKLYSMLCSRNVGSPVIW ALGSAGYEPAESKKFLSLAEEVVMAFPVDRTLAWTCYNFYQSTPTKLAGENYFFRSGEDMSVGTSWNILRPETVESLFYLWRLTGNKTYQEWGWNIFQAF EKNSRVEGGYVGLKDVNTGIKDNMMQSFFLAETLKYLYLLFSPSSVISLDEWVFNTEAHPLRIVARQDVESSDSGKREDKLDEPTQLTQAAGRNPFAKSP STSTQKKLENQLPAVGNISSMKTRLGIETQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	0	1
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	1.0	0.8886
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	2.8	0.8754
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	3.2	0.8576
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	4.1	0.8318
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Lus10019379 [exp]	4.6	0.8287
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	5.3	0.8523
AT1G71820		SEC6	SEC6 (.1.2)		Lus10026982 [exp]	6.0	0.8422
AT2G15900			Phox-associated domain;Phox-li...		Lus10012042 [exp]	6.0	0.8313
AT5G35180			Protein of unknown function (D...		Lus10019591 [exp]	6.6	0.8242
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10002104 [exp]	8.3	0.8725

Compare expression of checked genes

Lus10033368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.