Plant FIBer expression Database

Lus10033369 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16840 101 / 3e-28 unknown protein
AT1G78890 90 / 1e-23 unknown protein
AT2G19180 73 / 7e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034821
[exp]
125 / 9e-38 AT1G16840 140 / 2e-43 unknown protein
Lus10037317
[exp]
114 / 4e-33 AT1G16840 133 / 4e-40 unknown protein
Lus10035733
[exp]
113 / 9e-33 AT1G16840 130 / 9e-39 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G005900
[exp]
113 / 8e-33 AT1G16840 142 / 8e-44 unknown protein
Potri.010G252800
[exp]
112 / 4e-32 AT1G16840 146 / 8e-45 unknown protein
Potri.018G142900
[exp]
61 / 8e-12 AT2G19180 80 / 3e-18 unknown protein
PFAM info
Representative CDS sequence
>Lus10033369 pacid=23172088 polypeptide=Lus10033369 locus=Lus10033369.g ID=Lus10033369.BGIv1.0 annot-version=v1.0
ATGGCTCGCACCCTTTCCTTCTACCTCGCATCGGCCGCAGTCTCCAGATCATCCTCCGCCTCCTTCCGCTGCCTCGCCCTCCGATCGCACTCCAACCTTC
CCAACAGCAACGCCGCCCCCGATCCTGCCTCCGCCGATGAATCCTCCACCGATCCTCTCCTCAGGAAGCTCGAGGACGCCATCCACCGCATCATCGTCCG
CCGTGCTGCACCTGATTGGCTCCCTTTCGTCCCCGGATCCTCCTACTGGGTCCCTCCTCCTAGATCTAACGCTGGCTCCTACGGTATCGCCCAGCTCGTC
GAGAAGCTCGCCAATCCCTTGACCGATGAGGAAGCCCTCTCTGTTACCACCGTCCGCGGCTCCAGCTCGTCGAGAAGCTCGCCAATCCCTTGA
AA sequence
>Lus10033369 pacid=23172088 polypeptide=Lus10033369 locus=Lus10033369.g ID=Lus10033369.BGIv1.0 annot-version=v1.0
MARTLSFYLASAAVSRSSSASFRCLALRSHSNLPNSNAAPDPASADESSTDPLLRKLEDAIHRIIVRRAAPDWLPFVPGSSYWVPPPRSNAGSYGIAQLV
EKLANPLTDEEALSVTTVRGSSSSRSSPIP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G16840 unknown protein Lus10033369
[exp]
0 1
AT1G16840 unknown protein Lus10034821
[exp]
3.0 0.7533
AT4G14450 ATBET12 unknown protein Lus10022200
[exp]
7.2 0.7828
AT5G19590 Protein of unknown function, D... Lus10017733
[exp]
7.7 0.7896
AT5G56760 SAT-52, AtSerat... SERINE ACETYLTRANSFERASE 52, s... Lus10032686
[exp]
9.6 0.8132
AT5G59550 zinc finger (C3HC4-type RING f... Lus10000023
[exp]
10.1 0.7921
AT1G15100 RHA2A RING-H2 finger A2A (.1) Lus10007937
[exp]
14.4 0.7404
AT3G52820 ATPAP22, PAP22 purple acid phosphatase 22 (.1... Lus10021377
[exp]
18.7 0.7045
AT1G05000 AtPFA-DSP1 plant and fungi atypical dual-... Lus10031529
[exp]
23.8 0.7569
AT4G15410 PUX5, ATB' GAMM... serine/threonine protein phosp... Lus10015145
[exp]
24.9 0.6858
AT1G16840 unknown protein Lus10035733
[exp]
26.8 0.7449

Lus10033369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.