Plant FIBer expression Database

Lus10033370 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23940 972 / 0 dehydratase family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034822
[exp]
1151 / 0 AT3G23940 1009 / 0.0 dehydratase family (.1.2)
Lus10032616
[exp]
1121 / 0 AT3G23940 1162 / 0.0 dehydratase family (.1.2)
Lus10043132
[exp]
1090 / 0 AT3G23940 1148 / 0.0 dehydratase family (.1.2)
Lus10032617
[exp]
144 / 7e-41 AT3G23940 139 / 5e-40 dehydratase family (.1.2)
Lus10043131
[exp]
128 / 2e-34 AT3G23940 139 / 6e-39 dehydratase family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G176600
[exp]
1034 / 0 AT3G23940 1011 / 0.0 dehydratase family (.1.2)
Potri.001G051700
[exp]
1030 / 0 AT3G23940 960 / 0.0 dehydratase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00920 ILVD_EDD Dehydratase family
Representative CDS sequence
>Lus10033370 pacid=23172161 polypeptide=Lus10033370 locus=Lus10033370.g ID=Lus10033370.BGIv1.0 annot-version=v1.0
ATGCTATCAACCTTCGTTTTCCCACGCGCCGCGCCGTCATTCCCTCTGTCGGCGCCTACCACTCGGCACCGTGGAACCTCCCTCCGAGTAGCAGCTCAGT
CACAGCCTGCCGCCGTCTCGCCGCCGCCGCCGGCCGCCACCTTGACGGAGAAAAAACTCAATAAATACAGCTCCCAAGTTACAGAGCCCAAGTCTCAGGG
TGGATCCCAAGCCGTCCTCTATGGAGTAGGGCTATCGGACGATGACTTGACCAAGCCTCAGGTAGGCATCTCCTCGGTCTGGTACGAAGGGAACACTTGC
AACATGCACTTGTTGAAGCTCTCGGAGGCAGTGAAGCAAGGAGTTCAAGAGGCCGGAATGGTCGGATTCAGGTTCAACACTATTGGTGTCAGTGATGCTA
TCTCTATGGGGACGAGAGGGATGTGTTACAGCTTGCAGAGTAGGGACTTGATTGCTGATAGTATTGAGACCGTTATGAGTGCTCAGTGGTATGATGCCAA
CATCTCAATTCCCGGCTGTGATAAGAATATGCCAGGTACAATTATTGCAATGGGAAGGCTTAACCGGCCAAGTATCATGGTGTATGGTGGATCTATAAAG
CCTGGACATGTGAATGGTCATACCTATGATATAGTATCTGCATTTCAGGTCTATGGAGAGTATCTAAGTGGAGCTATAACTGATGACCATAGGAGAGAAG
TTTTACAGAATTCGTGTCCTGGGGCTGGTGCCTGTGGTGGAATGTATACTGCAAATACAATGGCTTCTGCTATTGAAGCCATGGGAATGTCTCTTCCATA
CAGCTCATCGCTACCTGCTGAGAGTGATTTGAAGCTGGATGAATGTCGTTTGGTTGGAAAGTACCTTCTAGAGTTGGTTAAGATGGACTTGAAACCACGA
GACATCATCACTCCTACATCATTACGCAATGCAATGGTTACTGTCATGGCACTAGGTGGATCTACCAATGCTGTGTTGCACTTAATTGCTATTGCAAGGT
CTGTTGGTTTGGACCTTACACTTGATGACTTCCAGAAGGTTAGTGATGAGATCCCATTCCTAGCTGATCTCAAACCTAGTGGCAAGTATGTTATGGAGGA
TGTTCACAAGATTGGAGGAACACCTGCAGTGCTTCGCTATCTGTTGGAATTCGGTTTCCTTGATGGAGATTCTTTGACTGTGACCGGGAAGACGTTGGGT
GAAAATCTGGCAGACTGCCCACCTTTGTCAGAGGGTCAGGAAATTATAAAGCCTGTGGACAACCCCATCAAGAAGACTGGTCACCTCCAAATATTACGTG
GGAATCTCGCACCTGATGGTTCTGTGGCAAAAATTACTGGAAAAGAAGGGCTTTATTTCTCTGGTCCTGCACTTGTGTTTGAAGGAGAGGAATCTATGAT
GAAAGCCATCTCTGAGGATCCTATGAGTTTTAAAGGGAAAGTGGTGGCAATTAGAGGAGAGGGACCAAAAGGTGGTCCTGGCATGCCAGAAATGCTAACA
CCAACAAGTGCAATTATGGGAGCTGGGCTTGGGAAGGATTGTGCATTGTTGACCGACGGGAGATTTTCAGGAGGTTCACATGGATTCGTGGTCGGCCATA
TTTGCCCTGAAGCACAGGAAGGTGGTCCCATTGGCTTGATTAGAAACGGAGACATAATCACCATAGATGTCAGAGAAAGGAGAATAGATGTTCAGCTTAC
GGATGAGGAAATGGAAGAGAGGAGAAAGAGTTGGACTCCTCCATCATACAAAGCCACCCGTGGGGTGCTCTACAAGTACATCAAGAACGTTCAATCAGCT
TCAAAAGGCTGTGTCACAGATGAGTAA
AA sequence
>Lus10033370 pacid=23172161 polypeptide=Lus10033370 locus=Lus10033370.g ID=Lus10033370.BGIv1.0 annot-version=v1.0
MLSTFVFPRAAPSFPLSAPTTRHRGTSLRVAAQSQPAAVSPPPPAATLTEKKLNKYSSQVTEPKSQGGSQAVLYGVGLSDDDLTKPQVGISSVWYEGNTC
NMHLLKLSEAVKQGVQEAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIIAMGRLNRPSIMVYGGSIK
PGHVNGHTYDIVSAFQVYGEYLSGAITDDHRREVLQNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSLPAESDLKLDECRLVGKYLLELVKMDLKPR
DIITPTSLRNAMVTVMALGGSTNAVLHLIAIARSVGLDLTLDDFQKVSDEIPFLADLKPSGKYVMEDVHKIGGTPAVLRYLLEFGFLDGDSLTVTGKTLG
ENLADCPPLSEGQEIIKPVDNPIKKTGHLQILRGNLAPDGSVAKITGKEGLYFSGPALVFEGEESMMKAISEDPMSFKGKVVAIRGEGPKGGPGMPEMLT
PTSAIMGAGLGKDCALLTDGRFSGGSHGFVVGHICPEAQEGGPIGLIRNGDIITIDVRERRIDVQLTDEEMEERRKSWTPPSYKATRGVLYKYIKNVQSA
SKGCVTDE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G23940 dehydratase family (.1.2) Lus10033370
[exp]
0 1
AT5G64950 Mitochondrial transcription te... Lus10004329
[exp]
2.2 0.8911
AT3G09630 Ribosomal protein L4/L1 family... Lus10014014
[exp]
7.9 0.8737
AT4G34200 EDA9 embryo sac development arrest ... Lus10014096
[exp]
10.0 0.8695
AT3G27060 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE ... Lus10032043
[exp]
10.7 0.8199
AT5G17710 EMB1241 embryo defective 1241, Co-chap... Lus10003741
[exp]
11.0 0.8536
AT3G62660 GATL7 galacturonosyltransferase-like... Lus10001461
[exp]
15.5 0.8376
AT1G79220 Mitochondrial transcription te... Lus10031184
[exp]
16.1 0.8643
AT1G14610 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2,... Lus10033331
[exp]
16.9 0.8680
AT1G73240 unknown protein Lus10026210
[exp]
17.5 0.8528
AT5G28740 Tetratricopeptide repeat (TPR)... Lus10041573
[exp]
18.8 0.8643

Lus10033370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.