Plant FIBer expression Database

Lus10033372 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033373
[exp]
112 / 6e-30 ND 64 / 3e-13
Lus10018646
[exp]
68 / 2e-13 ND /
Lus10035524
[exp]
66 / 8e-13 ND /
Lus10041677
[exp]
66 / 2e-12 ND /
Lus10028987
[exp]
65 / 4e-12 ND /
Lus10041676
[exp]
64 / 1e-11 ND /
Lus10016944
[exp]
57 / 8e-10 ND /
Lus10027774
[exp]
57 / 8e-10 ND /
Lus10026135
[exp]
53 / 5e-08 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10033372 pacid=23172126 polypeptide=Lus10033372 locus=Lus10033372.g ID=Lus10033372.BGIv1.0 annot-version=v1.0
ATGCCAGAGCTGATGTCATGGGATATGTGTTCCCACAACCATTTCTTGGATAGCCTGGGACATCGCAACTCCATCTCAGTGTGTGTCCTTGCGGACACAA
ACTGGGATGCTTACACCGAAGAGCATCCATGGGGGAAGGCGTTCGTGGGCCACGTGCCGTTTCATGGACAGCTGATTGTCCACGGAGTGATCATACGTGG
CCAGAGGTTGAAGGACCTGTGCAATGATCTCAACACCTACCAATGTCGAGTTAATCGTGACGGTTTCTCCTTTTTCTACATCGCCACTACCGTCAAGCAC
AGAAGGCTCAACGACTTGTTCCCATGGTACAAGTACGGCGTGCAGCCAAAGTTCGACACTGTCTGGGATAGGCTGGAGATATCCAACGACAGAGTCACTA
TTCTGAGCGGCGGCGGTGCTAATCAGAAGGCGGAGTTGGATGCGCTGAAGAACAGAGTGGCCGAGTTAAACCAACGGATTCAAGCCAAGGACGTGGTTCT
GAAGCAAAAGGAAGAGGAGTTGACCAGGAAAGGTCAAACCATTGTAGCTAAAGATAAGGTTCTGAAGGAGAAGGAGGAAGAGTTGATCAAGAAAGGTGAA
GCGATTCTGGCTAGGGACAAGATTGTAAAAGCGCTAGAGGAAGAATTGACCAAGAAAGATGAAACTATTCAAGGTAAAGATAAGGTTATCAAGGACAAGG
AAGAGGAGATTAAGAAGAAGGATAAAACCATTCAAGTTCTTAAGAATGCGATCGATGCCTTCACCAGCTAA
AA sequence
>Lus10033372 pacid=23172126 polypeptide=Lus10033372 locus=Lus10033372.g ID=Lus10033372.BGIv1.0 annot-version=v1.0
MPELMSWDMCSHNHFLDSLGHRNSISVCVLADTNWDAYTEEHPWGKAFVGHVPFHGQLIVHGVIIRGQRLKDLCNDLNTYQCRVNRDGFSFFYIATTVKH
RRLNDLFPWYKYGVQPKFDTVWDRLEISNDRVTILSGGGANQKAELDALKNRVAELNQRIQAKDVVLKQKEEELTRKGQTIVAKDKVLKEKEEELIKKGE
AILARDKIVKALEEELTKKDETIQGKDKVIKDKEEEIKKKDKTIQVLKNAIDAFTS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10033372
[exp]
0 1
AT3G11810 unknown protein Lus10030427
[exp]
1.7 0.9156
AT1G66950 ABCG39, PDR11, ... ATP-binding cassette G39, plei... Lus10014384
[exp]
3.0 0.9205
AT1G72230 Cupredoxin superfamily protein... Lus10027043
[exp]
7.1 0.9199
AT3G19850 Phototropic-responsive NPH3 fa... Lus10030554
[exp]
13.6 0.9085
AT4G23340 2-oxoglutarate (2OG) and Fe(II... Lus10009663
[exp]
14.1 0.8971
AT2G38300 GARP myb-like HTH transcriptional r... Lus10012239
[exp]
15.0 0.9154
AT4G27595 Plant protein of unknown funct... Lus10042237
[exp]
15.2 0.8350
AT5G10830 S-adenosyl-L-methionine-depend... Lus10024476
[exp]
16.1 0.9137
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Lus10032857
[exp]
18.0 0.8949
AT2G03760 AtSOT12, AtSOT1... ARABIDOPSIS THALIANA SULFOTRAN... Lus10031623
[exp]
20.7 0.9071

Lus10033372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.