Plant FIBer expression Database

Lus10033373 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033372
[exp]
112 / 9e-30 ND /
Lus10033371
[exp]
75 / 3e-17 AT4G15733 71 / 6e-18 SCR-like 11 (.1)
Lus10034823
[exp]
76 / 5e-17 AT4G15733 66 / 7e-15 SCR-like 11 (.1)
Lus10034824
[exp]
73 / 7e-16 AT4G15733 63 / 9e-14 SCR-like 11 (.1)
Lus10041677
[exp]
65 / 5e-12 ND /
Lus10029762
[exp]
58 / 4e-11 AT4G15733 60 / 1e-13 SCR-like 11 (.1)
Lus10042791
[exp]
57 / 2e-10 AT4G15733 65 / 2e-15 SCR-like 11 (.1)
Lus10041676
[exp]
59 / 3e-10 ND /
Lus10018646
[exp]
53 / 2e-08 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10033373 pacid=23172066 polypeptide=Lus10033373 locus=Lus10033373.g ID=Lus10033373.BGIv1.0 annot-version=v1.0
ATGCCCATCCATGTTGCTGTATATCTTCCAAGGAAACCATCCGCCTGGGGCCGAGCGCTGGTTGGGCACTTGGACCTCTCCGGTGGGGAGCTGAAGATCC
ACGGCGTGGTCATCAGTGGACAGAAGCTGCTGGAACTGTCCAAGGATCTGTACAAGTACCAGTGTCGGATCAACCGAGACGGATTTGCAATCCATAGGGA
CAAGTTCAACGGGGAGCATCGGAGACTGAACGATATGTTCCCCTGGTACAAGCACGGGGTGAAGCCACAGCTTATAAACATGGAGTACTGGAACAGGCTG
GAACTATCCAATGACAGCAAGACTATTATGAACTTGCAGGGCAAGGCTGATCAGGAACTGGAGACGCTGATCAAGAAGAAATTAGATCAGTTTTACCAAA
CTAAGTGTGAGATCAAGGAGAAGTCAGAAAAATGTCGAAGCTTGCAATCATGGCCATTTTCATTTGTGCCCTTCTCTTTCAGTTTGCTGGTGCATTGCAA
GAAGACGAACTTAAATGGTGCCCAAAGACGGACGTGTTCATTGGAGGATGCGGAAGGCCACAACAAGAACAATGTCTTTTGGATTTTCTGGGCAAGTATG
GAGCTAGCAGCATGCCCAGAAACTGCAGATGCACTACTCCTTCTGGCGCAAAACATTCTTGTACTTGTCAAGTTTGAGGACCGTGGAGCAGAGGTCAATG
GCGGTCAGCAAAGAAGGATTAAGGGTCTAGGTGAGGACCGTGGAGCAGAGGTCAATGGCGGTCAGTAA
AA sequence
>Lus10033373 pacid=23172066 polypeptide=Lus10033373 locus=Lus10033373.g ID=Lus10033373.BGIv1.0 annot-version=v1.0
MPIHVAVYLPRKPSAWGRALVGHLDLSGGELKIHGVVISGQKLLELSKDLYKYQCRINRDGFAIHRDKFNGEHRRLNDMFPWYKHGVKPQLINMEYWNRL
ELSNDSKTIMNLQGKADQELETLIKKKLDQFYQTKCEIKEKSEKCRSLQSWPFSFVPFSFSLLVHCKKTNLNGAQRRTCSLEDAEGHNKNNVFWIFWASM
ELAACPETADALLLLAQNILVLVKFEDRGAEVNGGQQRRIKGLGEDRGAEVNGGQ

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10033373
[exp]
0 1
Lus10022996
[exp]
4.2 1.0000
Lus10001326
[exp]
5.3 1.0000
Lus10004351
[exp]
5.3 1.0000
Lus10016867
[exp]
7.1 1.0000
AT2G36870 XTH32 xyloglucan endotransglucosylas... Lus10013823
[exp]
8.1 1.0000
Lus10015929
[exp]
8.9 1.0000
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Lus10036331
[exp]
9.9 1.0000
Lus10026755
[exp]
10.6 1.0000
AT4G17260 Lactate/malate dehydrogenase f... Lus10028931
[exp]
12.0 1.0000
AT4G16230 GDSL-like Lipase/Acylhydrolase... Lus10037776
[exp]
12.2 1.0000

Lus10033373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.