Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16860 620 / 0 Ubiquitin-specific protease family C19-related protein (.1) AT1G78880 613 / 0 Ubiquitin-specific protease family C19-related protein (.1) AT4G22290 317 / 1e-103 Ubiquitin-specific protease family C19-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034825 [exp] 825 / 0 AT1G16860 677 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Lus10005996 [exp] 172 / 2e-49 AT1G16860 202 / 2e-61 Ubiquitin-specific protease family C19-related protein (.1) Lus10030215 [exp] 172 / 3e-48 AT1G78880 195 / 3e-57 Ubiquitin-specific protease family C19-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006100 [exp] 769 / 0 AT1G16860 714 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252000 [exp] 768 / 0 AT1G16860 685 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252500 [exp] 639 / 0 AT1G16860 646 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.008G006000 [exp] 639 / 0 AT1G16860 652 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252400 [exp] 632 / 0 AT1G16860 647 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.011G022600 [exp] 327 / 1e-107 AT4G22290 451 / 4e-157 Ubiquitin-specific protease family C19-related protein (.1) Potri.004G002000 [exp] 322 / 1e-105 AT4G22290 381 / 1e-129 Ubiquitin-specific protease family C19-related protein (.1) Potri.002G176200 [exp] 197 / 2e-59 AT4G22290 189 / 6e-57 Ubiquitin-specific protease family C19-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033374 pacid=23172128 polypeptide=Lus10033374 locus=Lus10033374.g ID=Lus10033374.BGIv1.0 annot-version=v1.0 ATGGGTTCCCGTTTCCCATCTCATCAGCTCAGCAATGGCCTTTATGTATCTGGCCGGCCTGAGCAGCCAAAGGAAAGAACTCCAACAATGAGCTCTGTGG CCATGCCCTATACAGGCGGTGATATCAAGAAGTCAGGAGAATTGGGAAAGATGTTTGATATTACCATGGAAGGCTCGAAGTCAAGAAAGTCAGGTCCGAT AACTGGTGGTGCACCTTCAAGGACAGGATCATTTGGAGGTGCAGCTTCGCATTCAGGACCAATCATGCCCAATGCTGCTACTAGGGCTGCTTACACTTCT TCCGGTGCCGTGTCTTCAGGTGGGATGTCTGGTTCAGCTTCAATGAAAAAATCAAATTCTGGACCCCTTAATAAGCATGGTGAACCTCTTAAGAAGTCTT CTGGTCCTCAGTCTGGTGGAGGGACACCTTCTGGTCGTCAAAATTCTGGCCCTCTTCCTCCTATTCTGCCTGCAACTGGCCTCATCACATCCGGGCCAAC TTCTTCTGGGCCACTTAATTCCTCTGGGGCTCCTCGTAAGGTGTCTGGTCCCCTGGAATCTATGGGATCAATGAAGGTTCCCAGTTCTGGCGTTATTCAT AATCAGGCTATCTCTATTCTCAGCCAAGATGATGAGTTTTCGTTCAGAAAGAACTTCCCAAAACCGATATTTTGGTCACTCATTCTACTCTTTGTAATGG GTTTCATTGCTGGTGGATTCATCCTTGGAGCCGTCCACAATGCCATACTTCTTGTCGTGGTTGTGGTTCTTTTTGGTGCTGTTGCTGCACTATTCACATG GAATAATTGTTTCGGGAGAAAAGCTATCATGAGCCATATTTCTCAATATCCAGATGCTGAGCTGCGAAATGCTAAAAATGGGCAATTTGTGAAGATCTCT GGGGTTGTTACTTGTGGTAACGTTCCTCTCGAGTCGTCCTTCCAAAGGGTTCCTAGATGTGTATATACATCCACCAGTTTGTACGAGTATCGGGGATGGG ATTCAAAAGCTGCCAATGGTCAACATCGCCGTTTCACTTGGGGGCTCAGATCGTTAGAAAGGCGTGCAGTTGACTTCTACATCTCTGACTTCCAATCGGG TTTGAGAGCGCTGGTTAAAACTGGCTATGGTGCAAGAGTGACACCGTATGTTGAAGACTCCCTTGTCATTGACATCAATGCAGGTTCTGAGGAACTGTCT CCGGATTTTTCCAGATGGTTGGCTGAAAGGAATCTTTCAAGCGATGATCGGATGATGCGACTGAAGGAAGGGTACATCAAAGAAGGAAGCACAGTGAGTG TAATGGGGGTTGTTCAGAGGAATGACAATGTGCTTATGATCCTGCCTTCTACTGAACCTTTCACGACGGGTTGCCAATGGACAAAGTGTATCTGTCCGGC TAGCCTCGAGGGTATCGTGTTGAGATGTGAGGACTCATCCAAGAATGGTGTTATACGTGTGTAG
AA sequence Show only first row Show all	>Lus10033374 pacid=23172128 polypeptide=Lus10033374 locus=Lus10033374.g ID=Lus10033374.BGIv1.0 annot-version=v1.0 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDITMEGSKSRKSGPITGGAPSRTGSFGGAASHSGPIMPNAATRAAYTS SGAVSSGGMSGSASMKKSNSGPLNKHGEPLKKSSGPQSGGGTPSGRQNSGPLPPILPATGLITSGPTSSGPLNSSGAPRKVSGPLESMGSMKVPSSGVIH NQAISILSQDDEFSFRKNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLVVVVVLFGAVAALFTWNNCFGRKAIMSHISQYPDAELRNAKNGQFVKIS GVVTCGNVPLESSFQRVPRCVYTSTSLYEYRGWDSKAANGQHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVEDSLVIDINAGSEELS PDFSRWLAERNLSSDDRMMRLKEGYIKEGSTVSVMGVVQRNDNVLMILPSTEPFTTGCQWTKCICPASLEGIVLRCEDSSKNGVIRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16860			Ubiquitin-specific protease fa...		Lus10033374 [exp]	0	1
AT1G16860			Ubiquitin-specific protease fa...		Lus10034825 [exp]	1.0	0.9330
AT3G12110		ACT11	actin-11 (.1)		Lus10016558 [exp]	2.8	0.9075
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	8.5	0.8794
AT3G62110			Pectin lyase-like superfamily ...		Lus10038030 [exp]	10.0	0.8729
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	11.4	0.8945
AT1G20950			Phosphofructokinase family pro...		Lus10025167 [exp]	13.0	0.8632
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10025293 [exp]	16.7	0.8969
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	16.9	0.8780
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007585 [exp]	17.9	0.8961
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	25.6	0.8587

Compare expression of checked genes

Lus10033374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.