Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51540 644 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27220 553 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 44 / 0.0001 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44030 42 / 0.0006 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034826 [exp] 872 / 0 AT1G51540 644 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10014602 [exp] 526 / 0 AT3G27220 555 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10032070 [exp] 515 / 0 AT3G27220 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006200 [exp] 676 / 0 AT1G51540 662 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G252100 [exp] 665 / 0 AT1G51540 637 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G334800 [exp] 305 / 2e-101 AT3G27220 0 / 1 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 52 / 8e-07 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 51 / 8e-07 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 47 / 2e-05 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.011G046100 [exp] 46 / 3e-05 AT1G16250 89 / 3e-19 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 44 / 0.0002 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 44 / 0.0003 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.014G083200 [exp] 42 / 0.0006 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10033376 pacid=23172095 polypeptide=Lus10033376 locus=Lus10033376.g ID=Lus10033376.BGIv1.0 annot-version=v1.0 ATGGCACGGCTGCCAGGATCAAAGCAGAAACCGACGACGAGATTGGCCGTAGTCTGTGTTGCCTTGCTAGGTTTCGCTCTAATCGCCGATTATCTCTGGG CTTCGTCTCCGCATTTCGGAGCTTCAACTTTCTCCGATGTCCATATCCCCATTACCGATCTCATCATTCCCGGAACCGGCGGCAACGCTTCCGCAAAATC AGCGGATGCTGAGAAGCAAAAGAGTAATGCCAAGGGGGAAAACAAGTACGCTAATGTGCCTGAAAGATACCTCTCAGCGACATTTGCTGATTTTCCTGGC CCTACGCTAGATTGGAAGAAGATGGCTAGTTCCCCAGTGCCGCGTCTTGATGGAGCTGCTATCCAGATTAAGAATCTTCTCTTTGTCTTTGCTGGTTATG GAACCATTGATTATGTACATTCACACGTCGACATTTATAATTTCACTGATAATACTTGGGGAGGGAGATTTGATATGCCCAAAGAGATGGCACATTCACA CTTGGGAATGGTGACAGATGGGAGATACATCTATATTGTGAATGGACAATATGGACCACAGTGCAGAGAAGCAACTGCTTATACATTTGTGCTTGATACT GAAGCAAAGCAGTGGAGCCAGATGCCACCGTTGCCAGTTCCAAGATATGCACCAGCAACACAGCTTTGGAGGGGTAGACTTCATGTGATGGGCGGAAGCA AGGAAAATAGGCACACGCCAGCAGTAGAGCATTGGAGTCTGGCGGTTAAGGATGGAAAATCCTTGGAAAAGGAATGGAGGGAAGAAATTCCCATACCTCG TGGAGGACCTCACAGGGCTTGTGTTGTTGCAAATGATCGACTTTATGTTATTGGTGGTCAAGAGGGTGATTTTATGGCTAAACCTGGATCTCCAATATTC AAGTGTTCGCGTAGAAATGAGGTAGTATACGCTGATGTCTACATGCTGGATGATGAGATGAAGTGGAAAGTGTTACCTTCAATGCCAAAGCCTGACTCTC ACATTGAGTTTGCTTGGGCGCTTGTAAATAATTCCGTTGTAATCATTGGAGGAACAACAGATAAGCATCCTGTAACCAAGAGGATGGTCCTCGTTGGCGA AATCTTCCAGTTTAACCTAAACACACTGAAATGGTCGGTGATCGGGAAGCTTCCTTACCGGGTGAAAACGACACTGGTAGGATTCTGGGATGGAAATGTG TACTTCACTTCTGGGCAGCGAGACAAAGGACCAGATGATCCATCACCCAGGAAAGTCGTTGGGGATTTGTGGAGAACCAAATTGAAATTGGAACTCTGA
AA sequence Show only first row Show all	>Lus10033376 pacid=23172095 polypeptide=Lus10033376 locus=Lus10033376.g ID=Lus10033376.BGIv1.0 annot-version=v1.0 MARLPGSKQKPTTRLAVVCVALLGFALIADYLWASSPHFGASTFSDVHIPITDLIIPGTGGNASAKSADAEKQKSNAKGENKYANVPERYLSATFADFPG PTLDWKKMASSPVPRLDGAAIQIKNLLFVFAGYGTIDYVHSHVDIYNFTDNTWGGRFDMPKEMAHSHLGMVTDGRYIYIVNGQYGPQCREATAYTFVLDT EAKQWSQMPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPAVEHWSLAVKDGKSLEKEWREEIPIPRGGPHRACVVANDRLYVIGGQEGDFMAKPGSPIF KCSRRNEVVYADVYMLDDEMKWKVLPSMPKPDSHIEFAWALVNNSVVIIGGTTDKHPVTKRMVLVGEIFQFNLNTLKWSVIGKLPYRVKTTLVGFWDGNV YFTSGQRDKGPDDPSPRKVVGDLWRTKLKLEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51540			Galactose oxidase/kelch repeat...		Lus10033376 [exp]	0	1
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10014181 [exp]	3.0	0.7636
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10009825 [exp]	3.2	0.8091
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10040934 [exp]	6.3	0.7959
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031365 [exp]	6.8	0.8118
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	7.7	0.7492
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10025825 [exp]	8.5	0.7641
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	8.9	0.7887
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	9.6	0.7979
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	13.4	0.7764
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022988 [exp]	19.3	0.7474

Compare expression of checked genes

Lus10033376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.