Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51550 495 / 1e-173 Kelch repeat-containing F-box family protein (.1) AT1G68050 127 / 2e-31 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT2G18915 125 / 7e-31 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT5G57360 119 / 1e-28 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G36360 77 / 6e-15 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT1G03445 71 / 6e-13 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT2G27210 62 / 4e-10 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G18610 62 / 5e-10 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 60 / 2e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G27630 60 / 3e-09 ACBP5 acyl-CoA binding protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034827 [exp] 851 / 0 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10019169 [exp] 121 / 2e-29 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10029002 [exp] 119 / 1e-28 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10015531 [exp] 118 / 3e-28 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10020003 [exp] 117 / 3e-28 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10030757 [exp] 97 / 4e-21 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 93 / 8e-20 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10006959 [exp] 82 / 2e-16 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10025470 [exp] 82 / 3e-16 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G252200 [exp] 595 / 0 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.008G006300 [exp] 585 / 0 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.018G090800 [exp] 120 / 5e-29 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 119 / 8e-29 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G135200 [exp] 115 / 2e-27 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.010G105700 [exp] 113 / 1e-26 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G024700 [exp] 77 / 8e-15 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.013G008200 [exp] 76 / 3e-14 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 76 / 3e-14 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 66 / 2e-11 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10033377 pacid=23172202 polypeptide=Lus10033377 locus=Lus10033377.g ID=Lus10033377.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCTTCTTCTTCTACAACGATAATGGATCATCATCATCTTCATCTTCGTCGCCCATCTTTAATATGGCTCCAGATCATCTCTTCACCATAT TGCTCCTGCTCCCCGTTGACTCGATCCTCTCATTCTCCACCACCTGCAAGAAATTCAGGTCCCTCGCTACCTCAGATACCCTCTGGCACTCTGTTTGCAG CAGGGAATTCGGGACTTCCTCTGTCGATTCACTCAGATCTTCCCTTCTTCCAAATTCCAGATGGATGTCGCTCTACAGACAGCTGTCTCGCCTTGATTCC GTGTCTTGCATCAGACTTATTCCGGACCCAGATGCTCAATTGGGGATCCCTAGCCCCAGGGCTTCTCACTCACTCAATTTTATATCTGATTGCTTAGTCC TCTTTGGCGGCGGCTGTGAAGGAGGTCGCCATCTTGACGAGACATGGATAACATACGTCGGCAGCAACCCCCGGACAACGTTGAAATGGCAGAAAGTATG CACGGGGATCCCGAGTGGGAGGTTTGGCCATACGAGTGTTACTATTGGAAACTATGTCATTCTTTTCGGCGGGATCAATGACCGTGGAGACCGTCACAAT GACACTTGGGTTGGACGAGTTGTTCCCACAGACAACATTGGTGGCGGAATCACATTGTCATGGAGGCTACTTGATCTCGTCGGAACGATGGTCCCGCCAC CGAGGGGTGCGCATGCTGCTTGCTGCTTCGAGAGGAAAATGGTTATCCAGGGAGGGATCGGACTCGCTGGCCTTAGGTTAGGGGACACATGGGCTTTGGA GCTATCAGAAGACTTCTATTCCGGAACATGGCTGGAGTTATTGACTCATCCGGCACCTCCACCGCGATCAGGACACACGTTAACGTGCATCGGAGGAACC AAGATGGTCCTCTTTGGAGGTAGGGGAATTGGTTATGAGGTCATGGATGATGTGTGGCTTCTGCAAGTGTGTGAAGGTGATCTCAGGTGGGCGCAGATCG TGTACGAAGTGTCGAAAGTACCTCAAGGAGTCTCGCTGCGTCGAGTTGGTCATTCAGCTACTATGATTCTGGGAGGCCGGCTGCTCATCTATGGAGGAGA AGATTCGCTCAGGCACAGAAAAGACGACTTGTTGATCCTAGACATTGAGGCAGTCGCATCTTCATTGTGGAAGAAGATCAAGGAAAAGGGCGATAAACCG AACCGCAGATCGTTCCACAGGGCATGTGCAGATCAATCAGGGAGGTATCTGTATCTTTTCGGTGGAATGGTGGATGGATTGCTTCAGCCAGGTGAAGCAG CTGGGTTGAGGTTCGATGGAGAGCTCTTTGTTGTTGAGCTTTTCCAGTAG
AA sequence Show only first row Show all	>Lus10033377 pacid=23172202 polypeptide=Lus10033377 locus=Lus10033377.g ID=Lus10033377.BGIv1.0 annot-version=v1.0 MASSFFFYNDNGSSSSSSSSPIFNMAPDHLFTILLLLPVDSILSFSTTCKKFRSLATSDTLWHSVCSREFGTSSVDSLRSSLLPNSRWMSLYRQLSRLDS VSCIRLIPDPDAQLGIPSPRASHSLNFISDCLVLFGGGCEGGRHLDETWITYVGSNPRTTLKWQKVCTGIPSGRFGHTSVTIGNYVILFGGINDRGDRHN DTWVGRVVPTDNIGGGITLSWRLLDLVGTMVPPPRGAHAACCFERKMVIQGGIGLAGLRLGDTWALELSEDFYSGTWLELLTHPAPPPRSGHTLTCIGGT KMVLFGGRGIGYEVMDDVWLLQVCEGDLRWAQIVYEVSKVPQGVSLRRVGHSATMILGGRLLIYGGEDSLRHRKDDLLILDIEAVASSLWKKIKEKGDKP NRRSFHRACADQSGRYLYLFGGMVDGLLQPGEAAGLRFDGELFVVELFQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51550			Kelch repeat-containing F-box ...		Lus10033377 [exp]	0	1
AT3G04660			F-box and associated interacti...		Lus10007285 [exp]	4.2	0.9172
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	8.2	0.9323
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10020771 [exp]	12.2	0.8914
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	14.1	0.9188
AT1G10660			unknown protein		Lus10038056 [exp]	16.2	0.8976
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	16.4	0.8929
AT5G49710			unknown protein		Lus10000765 [exp]	19.0	0.9226
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	19.4	0.9150
AT1G18460			alpha/beta-Hydrolases superfam...		Lus10042972 [exp]	20.3	0.9031
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	21.4	0.9043

Compare expression of checked genes

Lus10033377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.