Plant FIBer expression Database

Lus10033378 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51560 466 / 7e-164 Pyridoxamine 5'-phosphate oxidase family protein (.1)
AT3G21140 456 / 2e-160 Pyridoxamine 5'-phosphate oxidase family protein (.1)
AT3G03890 95 / 9e-22 FMN binding (.1.2)
AT2G04690 41 / 0.0006 Pyridoxamine 5'-phosphate oxidase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034828
[exp]
693 / 0 AT1G51560 508 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1)
Lus10010649
[exp]
75 / 1e-14 AT3G03890 409 / 9e-144 FMN binding (.1.2)
Lus10013617
[exp]
74 / 7e-14 AT3G03890 363 / 6e-122 FMN binding (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G006400
[exp]
501 / 9e-178 AT1G51560 533 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1)
Potri.010G252300
[exp]
493 / 1e-174 AT1G51560 561 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1)
Potri.019G035200
[exp]
87 / 7e-19 AT3G03890 452 / 4e-161 FMN binding (.1.2)
Potri.013G057700
[exp]
84 / 4e-18 AT3G03890 429 / 6e-153 FMN binding (.1.2)
Potri.004G072400
[exp]
44 / 0.0002 AT5G24060 377 / 1e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Potri.017G148600
[exp]
44 / 0.0002 AT3G49140 256 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0336 FMN-binding PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Representative CDS sequence
>Lus10033378 pacid=23172145 polypeptide=Lus10033378 locus=Lus10033378.g ID=Lus10033378.BGIv1.0 annot-version=v1.0
ATGGAGGCTCTTGCAAGTTCGGCCTTTATTTCCAAATTCCCTGAATCATACCCGCTCCTCACTCCCTCCTCTTCTTCTCCCTGCTGTTCCTCATCTTCCA
CCAAGATTCTCTCCGCTAAGGCCGGAATATGGTCTCCCAAATTCGTCGAAACCGCGCGCTTCCCTCGACTCCGCCTTACTGCTGTAGGCGGCGCTGGGGA
CGATAAGACTCGCCGCTTGAATGATGAAGTTGCCTTAAGTTCTGACGCAGCCCTTTCTCTGTCTCAGAAAGTAAATGGATGTATCAAATGGCTGCTACAG
CTTGGTAGTGACGGCCTCTCTTGTGTTATGAAGGAACTCATAAAGAAAAATGAAGGAAATGAAAAGGATTCTGAGAAACTTTTGAAGGTGGAGCAGCTAC
CTTTGATGACAGCTTCCCCTGGAAGTGGAACCAGTGGGGGAACAAGAGCTGGGCTGTTCAGAACCCCGATTTCTGGTGGCGTACAGAGTGCAACCTCAGC
ACATGGCTTACCTCGACCAGCCCTGGCAGCTAGATTCGCCCATCTGTGCACTGTAATGTCTCGGATGCATCATCGGCGAGAAGGGTATCCATTTGGTTCT
TTGGTAGATTTTGCACCAGATGCAATGGGCCATCCAATATTTTCGTTTTCACCCTTGGCCATACACACACGGAACTTATTAGCAGATCCCAAATGCACCC
TAGTTGTTCAGATACCTGGATGGAGCAGCTTATCAAATGCAAGAGTTACAATCTTTGGAGATGTTTACCCGCTTGCAGAAGATGAGCAGGAATGGGCTCA
CAAACAGTATATTGCTAAACATCAGCAAGGTCCTTCCCAGCAGTGGGGGAATTTCTACTACTTCAGGATGCGAAATATAAGTGATATATACTTCATTGGA
GGTTTCGGCACTGTTGCTTGGGTGGACGTTAAAGAATATGAGGCCCTTCTTCCAGATAAGATTGCGGTTGATGGAGGAGAGAACAATTTGAAGGAACTGA
ATGTGATGTTCTCAAAGCGACTGAAAGAGCTGTTAGCAAGTGAAATGGAGGTAGATGATGCTGCAATCATATCAATAGACAGCAAAGGGATAGACATAAG
GGTTCGTCAAGGTGCACAGTTCAACGTTCAGAGGCTATCCTTTGAAGAAGGGGTGGTTGTAGAGAATTTGGAGGAAGCTAAGCTTGCTGTGAGGAAAGTG
TTGAACAAAGGCAAAGTTGGTAACCTGCAGAAATAA
AA sequence
>Lus10033378 pacid=23172145 polypeptide=Lus10033378 locus=Lus10033378.g ID=Lus10033378.BGIv1.0 annot-version=v1.0
MEALASSAFISKFPESYPLLTPSSSSPCCSSSSTKILSAKAGIWSPKFVETARFPRLRLTAVGGAGDDKTRRLNDEVALSSDAALSLSQKVNGCIKWLLQ
LGSDGLSCVMKELIKKNEGNEKDSEKLLKVEQLPLMTASPGSGTSGGTRAGLFRTPISGGVQSATSAHGLPRPALAARFAHLCTVMSRMHHRREGYPFGS
LVDFAPDAMGHPIFSFSPLAIHTRNLLADPKCTLVVQIPGWSSLSNARVTIFGDVYPLAEDEQEWAHKQYIAKHQQGPSQQWGNFYYFRMRNISDIYFIG
GFGTVAWVDVKEYEALLPDKIAVDGGENNLKELNVMFSKRLKELLASEMEVDDAAIISIDSKGIDIRVRQGAQFNVQRLSFEEGVVVENLEEAKLAVRKV
LNKGKVGNLQK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G51560 Pyridoxamine 5'-phosphate oxid... Lus10033378
[exp]
0 1
AT1G51560 Pyridoxamine 5'-phosphate oxid... Lus10034828
[exp]
1.0 0.8975
AT4G33520 AtHMAC6, HMA6, ... Arabidopsis thaliana heavy met... Lus10023777
[exp]
5.1 0.8187
AT5G62090 SLK2 SEUSS-like 2 (.1.2) Lus10006324
[exp]
12.7 0.7939
AT4G02750 Tetratricopeptide repeat (TPR)... Lus10030549
[exp]
12.7 0.7956
AT3G29230 Tetratricopeptide repeat (TPR)... Lus10030932
[exp]
19.5 0.8057
AT1G64310 Tetratricopeptide repeat (TPR)... Lus10028074
[exp]
20.0 0.7957
AT1G80660 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase... Lus10026093
[exp]
22.0 0.7751
AT2G29260 NAD(P)-binding Rossmann-fold s... Lus10040730
[exp]
25.0 0.7668
AT5G55280 ATFTSZ1-1, CPFT... CHLOROPLAST FTSZ, ARABIDOPSIS ... Lus10016579
[exp]
27.4 0.8063
AT5G52820 WD-40 repeat family protein / ... Lus10039597
[exp]
31.0 0.7946

Lus10033378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.