Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71070 241 / 6e-76 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 225 / 2e-69 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 224 / 7e-69 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G27480 223 / 1e-68 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT2G37585 220 / 6e-68 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 221 / 1e-67 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G24040 215 / 2e-65 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 210 / 2e-63 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G03340 207 / 4e-62 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 204 / 2e-61 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034829 [exp] 707 / 0 AT1G71070 280 / 7e-91 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10010887 [exp] 244 / 2e-76 AT1G71070 572 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10012710 [exp] 239 / 6e-75 AT1G71070 561 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 233 / 3e-72 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10023687 [exp] 230 / 5e-71 AT3G24040 491 / 2e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 230 / 5e-71 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10011765 [exp] 229 / 1e-70 AT3G24040 491 / 4e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 224 / 9e-69 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 223 / 2e-68 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006500 [exp] 382 / 2e-130 AT1G71070 321 / 8e-107 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G114800 [exp] 252 / 4e-80 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 248 / 1e-78 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 239 / 2e-74 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 228 / 2e-70 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 225 / 2e-69 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G053800 [exp] 224 / 4e-69 AT3G24040 505 / 6e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 224 / 5e-69 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 221 / 5e-68 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 222 / 7e-68 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10033379 pacid=23172243 polypeptide=Lus10033379 locus=Lus10033379.g ID=Lus10033379.BGIv1.0 annot-version=v1.0 ATGAAGCTACCTGGGTTCTCTTCAGGATTGCTTCTTGCTGTCACAATGGATGTCATACTACTCACTTCGCGATCGATACGAATCGTATGGCTTCCCTACA GGTTATCAACAACCAGTACTGACCACATTACTGTCCAAGCTGGCACTAACAACATCATCACTCCTTCCAAAGGTCCTGGCTTCCCTCCTGTACTAGCCTA CTGGATTTTCGGCACAAGTGGAGATGGCGAGCGGATGTTGAGGCTTCTGAAAGCAATCTACCATCCCAGAAACCAGTACTTGCTGGAACTGGATGCAGAG TCCTCCTATGACCAGGAGCGTGTAGATTTGGCTTTACGGGTCGAATCGGAGAGGGTATTCTCGGAATTTGGGAATGTTAATGTTATTGGGAAGGGATGGG GTGTTAACCAGATGGGTGCATCTGGGTTGGCTGCAATGCTAAATGCTGCTGCTTTGCTTCTGAGGTTGAACCAACACTGGGATTGGTTCATCAATTTAAG CCCTGAAGAGTACCCACTCATCACTCCAGATGATTTGCTGCATGCCATCAGTTCATTGCCTAGAGATGTCAACTTCATCCATTATACCAATTCTAATGAC TGGAGGGAGAAGAAGATGCAAATAGTGGTGGATCCAAGCTTACATCTCAACAACAAGGACAGCTACCTTTACTACGCTGTAGAGAAACGCAACATTCCTG ACGCTTTCCGCATATTTGGAGGATCGCCTAGGGTGATTTTAAATAGGGAGTTACTAGACTACTGCGTGCAAGGATGGGACAACCTCCCAAGGAGACTGCT AATGTACTTGGCTAACACAGCCTACCCATTAGAGACATACTTCCACACTGTCCTCTGCAACTCCCCTGACTTCCAGAACACCACCATTCTCAACTCTGAC CTCAGGTACAACATCGATCACAAGAATACTGATCACGAATTGCAGTTGGCAGATATGCTAGGTAGTGGGGCTGTGTTTGCCAGAGCATTTAACAGAGATG ATGATGATCACTTGATTCTGGACAAGGTTGATGAGGCTGCCCTGAAGCGCCCCAGGGACGAAGTAGTGCACGGGCAATGGCGTAGGTTACAAGATGATGA TGATGGTAGCACGGTTCATAATATTAATGCTGTGAAGGCAGGGTTGAACGGGGTAGAGCTTGGGATTTTGTTGGCTAAACTTGCTTCCCAAGGAACAAAT ACTAGTTACTGCCATCAAATGCTTTCAAATCAATGA
AA sequence Show only first row Show all	>Lus10033379 pacid=23172243 polypeptide=Lus10033379 locus=Lus10033379.g ID=Lus10033379.BGIv1.0 annot-version=v1.0 MKLPGFSSGLLLAVTMDVILLTSRSIRIVWLPYRLSTTSTDHITVQAGTNNIITPSKGPGFPPVLAYWIFGTSGDGERMLRLLKAIYHPRNQYLLELDAE SSYDQERVDLALRVESERVFSEFGNVNVIGKGWGVNQMGASGLAAMLNAAALLLRLNQHWDWFINLSPEEYPLITPDDLLHAISSLPRDVNFIHYTNSND WREKKMQIVVDPSLHLNNKDSYLYYAVEKRNIPDAFRIFGGSPRVILNRELLDYCVQGWDNLPRRLLMYLANTAYPLETYFHTVLCNSPDFQNTTILNSD LRYNIDHKNTDHELQLADMLGSGAVFARAFNRDDDDHLILDKVDEAALKRPRDEVVHGQWRRLQDDDDGSTVHNINAVKAGLNGVELGILLAKLASQGTN TSYCHQMLSNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	0	1
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	1.4	0.9420
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10027813 [exp]	3.0	0.9574
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10002209 [exp]	4.0	0.9346
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10037284 [exp]	4.2	0.9391
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	7.3	0.9344
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	7.3	0.9383
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	7.7	0.9320
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10043160 [exp]	9.7	0.8879
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007584 [exp]	11.1	0.9390
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	12.1	0.9102

Compare expression of checked genes

Lus10033379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.