Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21150 97 / 1e-24 CO EIP6, BBX32 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) AT4G27310 67 / 3e-13 CO B-box type zinc finger family protein (.1) AT5G54470 67 / 4e-13 CO B-box type zinc finger family protein (.1) AT4G15248 64 / 4e-13 CO B-box type zinc finger family protein (.1) AT3G21890 60 / 2e-11 CO B-box type zinc finger family protein (.1) AT5G15840 56 / 5e-09 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT3G02380 54 / 3e-08 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G24930 54 / 4e-08 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G47890 50 / 3e-07 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT1G68190 50 / 7e-07 CO B-box zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034830 [exp] 350 / 2e-123 AT3G21150 112 / 3e-30 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Lus10031583 [exp] 63 / 1e-12 AT3G21890 96 / 1e-26 B-box type zinc finger family protein (.1) Lus10031593 [exp] 64 / 2e-12 AT4G27310 119 / 2e-33 B-box type zinc finger family protein (.1) Lus10033751 [exp] 64 / 3e-12 AT4G27310 114 / 9e-32 B-box type zinc finger family protein (.1) Lus10015097 [exp] 62 / 3e-12 AT4G15248 94 / 5e-26 B-box type zinc finger family protein (.1) Lus10039694 [exp] 61 / 7e-12 AT4G15248 108 / 1e-31 B-box type zinc finger family protein (.1) Lus10027151 [exp] 61 / 1e-11 AT4G15248 109 / 7e-32 B-box type zinc finger family protein (.1) Lus10039727 [exp] 59 / 5e-10 AT5G54470 118 / 1e-32 B-box type zinc finger family protein (.1) Lus10018513 [exp] 58 / 6e-10 AT4G27310 117 / 3e-32 B-box type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G251800 [exp] 151 / 4e-45 AT3G21150 130 / 5e-37 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Potri.008G007000 [exp] 147 / 2e-43 AT3G21150 128 / 3e-36 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Potri.013G150500 [exp] 69 / 8e-14 AT4G27310 114 / 1e-31 B-box type zinc finger family protein (.1) Potri.007G121100 [exp] 65 / 2e-13 AT4G15248 108 / 2e-31 B-box type zinc finger family protein (.1) Potri.004G026900 [exp] 64 / 8e-13 AT4G27310 109 / 2e-30 B-box type zinc finger family protein (.1) Potri.001G414700 [exp] 64 / 9e-12 AT5G54470 126 / 2e-35 B-box type zinc finger family protein (.1) Potri.011G125400 [exp] 63 / 1e-11 AT5G54470 120 / 1e-32 B-box type zinc finger family protein (.1) Potri.017G039400 [exp] 60 / 2e-11 AT4G15248 100 / 3e-28 B-box type zinc finger family protein (.1) Potri.011G039700 [exp] 60 / 9e-11 AT4G27310 105 / 3e-28 B-box type zinc finger family protein (.1) Potri.004G027100 [exp] 56 / 5e-10 AT5G54470 97 / 4e-26 B-box type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033380 pacid=23172193 polypeptide=Lus10033380 locus=Lus10033380.g ID=Lus10033380.BGIv1.0 annot-version=v1.0 ATGGAGGATCATCATCGGGTAATCAGGGTTTGCGAGCTCTGCTCTGGATCGCCGGATCTCTACTGCAGCTCCGACGATGCTTTCCTCTGCTTCCACTGCG ATTCCAGAGTCCACGCCACTAACTTCCTCGTCGCTCGTCATCTCCGCCTCTTCATCTGCACTCACTGCCGCTCTCTTACGGGGAACTCCTTCTCCGGCCC TGGATCTCATTCTCAATCACCTGCTGCCTGCACCTCCTGCACTTCCCAAACTGACTCCATTTCCTGCTCTTCTTCCTCGGCTCTCTCCTCCACCTGCATT TCCACTACTCCTCAATCGCTCTGCTCTGGTAATTCGTCGTCGATCCATGAGGCGTTGGATTTGAGGAGATCCGGTATCAATGATGGCAAGGTCCGGGTTG TTTTCTCGAATTGGTGTAGGAAGCTGGGGGTTAAAGGTGACCTGGTGGAGGCGAAAGCCGTTCAGGCGATGGAGATGTGTTGGGGGAGACCGGGGAGAGT GTTGCCTTTTCGGTTGAGCTTAGCGGCGTCGTTTTGGCTCGGAGCGAGGCTGAGTGGTGACAACTCGCCTCGGAATCTGTTGAAATTGGCGCAGGTTTCG GGGGTTCCGGCGGAGCTGATTGTCCGTGTGGAGGCGAAACTTGAAGGGCAGTTGAGGAGCGGTGGGAGATCGCGGCGGCGGGAATCGGAGATGGTGGAGG GGTGGGGAGAGTCGTGTGTTTGA
AA sequence Show only first row Show all	>Lus10033380 pacid=23172193 polypeptide=Lus10033380 locus=Lus10033380.g ID=Lus10033380.BGIv1.0 annot-version=v1.0 MEDHHRVIRVCELCSGSPDLYCSSDDAFLCFHCDSRVHATNFLVARHLRLFICTHCRSLTGNSFSGPGSHSQSPAACTSCTSQTDSISCSSSSALSSTCI STTPQSLCSGNSSSIHEALDLRRSGINDGKVRVVFSNWCRKLGVKGDLVEAKAVQAMEMCWGRPGRVLPFRLSLAASFWLGARLSGDNSPRNLLKLAQVS GVPAELIVRVEAKLEGQLRSGGRSRRRESEMVEGWGESCV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10033380 [exp]	0	1
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	1.0	0.9622
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	1.4	0.9462
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10017977 [exp]	1.7	0.9374
					Lus10021347 [exp]	2.2	0.9232
					Lus10013471 [exp]	2.4	0.9166
AT4G14690		ELIP2	EARLY LIGHT-INDUCIBLE PROTEIN ...		Lus10039379 [exp]	3.5	0.9298
AT3G52740			unknown protein		Lus10021366 [exp]	5.3	0.9077
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10000906 [exp]	9.5	0.8994
AT3G52105			unknown protein		Lus10012208 [exp]	11.0	0.8875
AT5G62140			unknown protein		Lus10015008 [exp]	11.7	0.9010

Compare expression of checked genes

Lus10033380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.