Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT3G20270 172 / 6e-48 lipid-binding serum glycoprotein family protein (.1.2.3) AT1G11020 148 / 9e-42 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G22120 119 / 8e-31 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034832 [exp] 369 / 2e-125 AT1G50440 379 / 7e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033053 [exp] 137 / 1e-37 AT1G11020 457 / 2e-163 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016426 [exp] 120 / 4e-31 AT2G22120 543 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10019687 [exp] 119 / 1e-30 AT2G22120 546 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10017764 [exp] 107 / 2e-27 AT1G11020 254 / 3e-85 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G252900 [exp] 357 / 2e-124 AT1G50440 370 / 5e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.008G005800 [exp] 344 / 4e-119 AT1G50440 374 / 2e-132 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.008G004500 [exp] 231 / 7e-75 AT3G20270 308 / 4e-101 lipid-binding serum glycoprotein family protein (.1.2.3) Potri.018G073400 [exp] 150 / 9e-43 AT1G11020 389 / 2e-136 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G154800 [exp] 135 / 7e-37 AT1G11020 406 / 4e-143 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G085900 [exp] 124 / 2e-33 AT2G22120 388 / 4e-136 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G081500 [exp] 122 / 4e-32 AT2G22120 521 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G111700 [exp] 41 / 0.0005 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033381 pacid=23172091 polypeptide=Lus10033381 locus=Lus10033381.g ID=Lus10033381.BGIv1.0 annot-version=v1.0 ATGTTGGAAGATTGCGGGGTTGGTGTGCTTGAAGGTGAGTCAGTGCCTCGGTGGGGATGGTTCATAAGGAGATATACAGCTTTGCACGCGAGTAAACACA TCTTTGGCAAGGTAGATGAAATTGTTGGCCACACATACTTGTTTCTGAAAGAGCAACTTGAGCGTTTCACGGTGCCGCCTCCATCTGGCATACTTCACGG AACCATAATTGATCAGTTCATTGGTTGTGGGAAATCCAGAGATATCGCCCATGAGCTTGCCTCACAAATTTGGTTGGCCGTTCTCGACAACCTGGAGGAG AATGAGCGCATGCTTAAATGTCTTGCACATGAAGGGGATGTATTTCTTCCATACCCATACACAAAATCTATAAAGGTGCAGTGGCGGGTGTTTGACAAGC TGTTCACTGATATTCGCGACTGTTTAGATCATTCGGAGTATTACGAGGCCTTGGCGTGTGCAAAGAACAGGTTTCAGCCAATACCATCTACATGGCTGGG GGATGACTTAATTGCACCATGTCATTGCAAAGGCACTCAGAAGTATGTCCACAGATCGTGTCTCGATAATTGGAGATCCACAAAGGAGGGATTTGCTTTT GCCCACTGTACTGAGTGCCGGGCGTTGTTTGTATTGCGTGCAAATGTCCCACCTGATCGCTGGTGGTTGAGATTGAAGTTTCAGTTCCTTGTTGCTCGGG ACCATGCATTCATTTTTATTGCTGTTCAGCTGATCGTTGCATTCTTGGGGGTTCTGGTGTACAAGTTCTATGGGGAGGAACTCAGAGAAATGTTTGGCTA TGAAGAGCATCCTTATGGGTTTTATACAATGGCCGTTTTGGCAATTGTCCTGGTGGGCTTGCTCTATGGTTTTTTCATTGCTATAATATGTGGACAAAGG ATCAACGAGCGCCACTACCATGTTCTTGCCAAACAAGAGCTAACAAAGGAGTACGTGGTGGAAGATCGAGACGCCAGCAAGAATGTGCCTGAACTTGATG ACAGCCATATTGCGGAACTAAGGATGTTAGGCCTCTACTAA
AA sequence Show only first row Show all	>Lus10033381 pacid=23172091 polypeptide=Lus10033381 locus=Lus10033381.g ID=Lus10033381.BGIv1.0 annot-version=v1.0 MLEDCGVGVLEGESVPRWGWFIRRYTALHASKHIFGKVDEIVGHTYLFLKEQLERFTVPPPSGILHGTIIDQFIGCGKSRDIAHELASQIWLAVLDNLEE NERMLKCLAHEGDVFLPYPYTKSIKVQWRVFDKLFTDIRDCLDHSEYYEALACAKNRFQPIPSTWLGDDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAF AHCTECRALFVLRANVPPDRWWLRLKFQFLVARDHAFIFIAVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQR INERHYHVLAKQELTKEYVVEDRDASKNVPELDDSHIAELRMLGLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10033381 [exp]	0	1
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	1.4	0.9488
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	2.8	0.9385
AT4G10170			SNARE-like superfamily protein...		Lus10002944 [exp]	4.2	0.9302
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	4.5	0.9271
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	5.9	0.9225
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	6.9	0.9035
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	8.0	0.9016
AT4G03020			transducin family protein / WD...		Lus10029621 [exp]	8.9	0.8941
AT1G08110			lactoylglutathione lyase famil...		Lus10021429 [exp]	11.0	0.8829
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10042895 [exp]	14.4	0.8985

Compare expression of checked genes

Lus10033381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.