Plant FIBer expression Database

Lus10033383 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16810 110 / 6e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034837
[exp]
208 / 2e-70 AT1G16810 133 / 7e-41 unknown protein
Lus10026960
[exp]
99 / 3e-27 AT1G16810 110 / 7e-32 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G253400
[exp]
135 / 1e-41 AT1G16810 113 / 5e-33 unknown protein
Potri.005G174400
[exp]
106 / 3e-30 AT1G16810 121 / 3e-36 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08555 DUF1754 Eukaryotic family of unknown function (DUF1754)
Representative CDS sequence
>Lus10033383 pacid=23172105 polypeptide=Lus10033383 locus=Lus10033383.g ID=Lus10033383.BGIv1.0 annot-version=v1.0
ATGTCTGCTTTCGACAATGTGGTTGGTGGGAAGCTGAAGCTGAAGGGCAAGGCTTTGGATGTAAAAGCTGGTGGTACAAAGAAGAAAAAGAAACAGAAGA
AAATCCGGGAAGAGGTTGCTCAAGTAATCGAAACTGAGCTATCAGCAGATCAAGTTGCTGAAGAATCAGCTGATGTGAATGAAGAGGTTACAGAAGGCAA
CAGCAAACTGAGCAATGAAGGTAAGTCTGGCAGTTACAAAGATCATATGACGCCTGCGGAGAGACGATATATAGAACAGAGGGAGAGGCTGGACCGACAC
AGCATGGCGAAAGAAGCGAACAAATCACACAGAGATAGGATCCAAGATTTCAACCAGTATCTGGCAAATATGAGTGAGCACTATGACATTCCTAAAGTTG
GGCCTGGGTGA
AA sequence
>Lus10033383 pacid=23172105 polypeptide=Lus10033383 locus=Lus10033383.g ID=Lus10033383.BGIv1.0 annot-version=v1.0
MSAFDNVVGGKLKLKGKALDVKAGGTKKKKKQKKIREEVAQVIETELSADQVAEESADVNEEVTEGNSKLSNEGKSGSYKDHMTPAERRYIEQRERLDRH
SMAKEANKSHRDRIQDFNQYLANMSEHYDIPKVGPG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G16810 unknown protein Lus10033383
[exp]
0 1
AT5G11500 unknown protein Lus10038625
[exp]
1.0 0.8887
AT2G29540 ATRPAC14, ATRPC... RNApolymerase 14 kDa subunit (... Lus10040717
[exp]
1.4 0.8801
AT2G29590 Thioesterase superfamily prote... Lus10018205
[exp]
2.4 0.8613
AT1G65280 DNAJ heat shock N-terminal dom... Lus10017919
[exp]
3.5 0.8596
AT4G16710 glycosyltransferase family pro... Lus10018891
[exp]
6.5 0.8198
Lus10003566
[exp]
6.9 0.8240
AT3G12480 CCAAT NF-YC11 "nuclear factor Y, subunit C11... Lus10024082
[exp]
8.8 0.8483
AT5G14680 Adenine nucleotide alpha hydro... Lus10014545
[exp]
9.2 0.8230
AT1G52740 HTA9 histone H2A protein 9 (.1) Lus10019447
[exp]
9.7 0.8536
AT5G16780 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVEL... Lus10023155
[exp]
12.6 0.7994

Lus10033383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.