Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 697 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 696 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 693 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 692 / 0 EFR EF-TU receptor (.1) AT3G47110 665 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 462 / 8e-145 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 408 / 4e-126 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 400 / 2e-122 Leucine-rich repeat protein kinase family protein (.1) AT3G49670 396 / 2e-121 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 394 / 2e-120 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033362 [exp] 991 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 974 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 965 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 950 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 940 / 0 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 929 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 926 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 923 / 0 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037311 [exp] 869 / 0 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034000 [exp] 810 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 807 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 796 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 794 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 793 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 787 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 785 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 772 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 766 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 765 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033384 pacid=23172223 polypeptide=Lus10033384 locus=Lus10033384.g ID=Lus10033384.BGIv1.0 annot-version=v1.0 ATGGCGTCTGCAAACATAATCATCTACTTGCCTTACATCTTTCTCTTCCACTTACTTCAACTTCTTCATGTCTCAGCCAACAACCACAGTGACAGGCTCG CTCTGCTGGAATTCAAGAAAGGAATTACCAATGACCCGCATGGAGTTTTCAATTCCTGGAATGACTCCTTCCATTTCTGCTATTGGCAAGGAGTTCAGTG CACTCCTGGAAATGATGATCAAAGGGTCACATCCTTGCTTTTACCTCAGCTTAGCTTAGCTGGCACTCTATCTCCACACATTGGCAACCTCAGCTTCCTC AGATTCATTAACCTCGAAAACAACAGCTTCCGCGGCCAAATCCCATCGCAAATAGGCAACCTTTTCCGCCTCCGACATTTAAACATGACCCAGAACACAT TTCAAGGGAATATTCCGGCCAACTTAAGCCGATGTTCGCAGCTCAGGATCCTGAAGCTGGGAGGTAATCAACTAGTAGGAGGGATTCCTGCAGAGATCGG GTTGTCTTTGTCGAAGCTGGAAATTCTCAGAATTGGAACCAATGACCTGACGGGAACTCTCCCTGCTTCCCTTGGAAATCTTTCGCAGCTGGTCAATTTG GGCGCTGCGTATAACAATTTAGTGGGTCAAATCCCTGACTGCTTCGGTCGACTTTCCAAGCTGAAATTGATTGCCATTGGGGTCAACCAACTCACAGGTA CAATTCCTCTGTCTCTGTACAATGTCTCATCCCTCAACATCATGACATTTGCTATGAACAAACTTGAAGGCACTTTACCAGAGAATTTAGGTCTCACTCT CGCTAACCTAGCCTACATTGGTGTTTCCGGGAACAATTTGTCCGGGACGATCCCTCGATCATTCTGCAATGCTTCTCAGCTAGTTGACATCAACATGAAC AGAAACAATTTCGTTGGGAGGATTCCAAACTGCTTGGGGAATTACGGTGGGCTTCTATGGGTAGACATTGCTGTCAATAACCTTGGTTACAATTCAACGG GGGACTTCGATTTCTTGACTTCCTTGACAAACTGCACCAGACTCGAACGCTTGGGGATTTCTCTCAACAATTTTGGCGGTGCATTACCGGATTCTATAGG AAACTTATCGTCAACCCGGTTCAAAGAGTTATTCATTTCATCCAACCAAATCACTCTTCTCCCCGAGTCACTAGAGAATCTCATTGGGTTGGTCAATGTC GAAATGGCCTTTAACTTTCTTAGAGGCTCCATTCCTTCATACTTTGGGAATTTCCACAACTTACAAGGACTGGACTTGCAAGGAAACATGTTTTCAGGCA AAATTCCCGAGTCCATAGGCAACCTCAGCCAATTGTTTAAGCTTGATCTCTCGTCGAACAGACTAGAAGGCCTGATTCCTGCAAGTCTAGGGAAATGTAC TAGACTCAGTTCTATTGACATTTCCAGCAATAGACTGAGTGGAGCTATATATCCAGAGATAATGAACATTTCTTCTTCATTAGTAACACTGTTCAACATG TCCCACAATCTGCTCAGCGGGAACCTTCCTCCTGCAATAGGAAAGTTGACTAATTTAAATGCAATGGATCTCTCATACAACAATCTCACAGGGGAAATCC CAAACACGATCGCCAACTGCGAGAGCTTGGAGCATCTATTTTTGCAGGAGAATTCATTTGATGGGATCATCCCTCCATCTTTGGCTTCCATGAAAGGCTT ACGGGAAGTGGATCTTTCCAAGAACAAGCTGTCAGGAGAAATCCCACAACAGCTTGAGAACGTTCGATTTCTCGAATATCTAAACCTCTCTTACAACAGT CTTGGTGGGGAGGTTCCGAATCAAGGAGTATTTACGAATTCAAGTGCAATTTTGTTGATGGGGAATCCTCAGCTTTGTGGCGGTGTGGTTGAGCTTGATC TTCCCAAATGCCCAATTCCACAGCCAGCTAGTAGTAGCAGACTTTCCAGCAGAGTTAAATTGAGCATCATACTTGTTCCTGTTCTTATTCTGGCTCTTTT GATAGCAGTTGTATCATTTTACATGCACAGAAGATTAAGGAAGGCTGAATCAGTTTCTGAAGATGGAATTCATGAGCAATTTCTGAGAGTTTCTTACAGA GAACTTGATGAAGCAACTGATGGGTTCTCTTCAAACAACTTACTTGGTTCTGGTGGGTATGGTACTGTCTACAAAGGAAAGCTGAAACAAGTTCAAAAAC CAGTAGCTGTTAAGGTACTTGACCTTCAAAGAAACCAAGCCTGTAAGAGCTTAGCAGCGGAATGCAACGCATTGAGGAATGTTCGTCACCGGAATCTTGT AAAGGTTGTGTCTTTCTGTTCTAGTTTGGACAATAGAGGCAATGAATTCAAGGCTCTAGTGTTTGAGTACATGGAGAATGGAAGCTTGGCGGATTGGCTG CATCAACACAAAAAAAACTTGAGCATGTTACAAAGGCTGAACATTGTCATAGACGTGGCAACCGCGCTGCACTATCTCCACGATCTTTGCGAAATACGAA TCGTTCACTGCGATCTGAAGCCGAGCAATGTTCTATTGGATGGTGAGATGGTGGCTCATGTCAGTGATTTTGGGCAGGCAAGACTACGAGATGACCCAAT TTCTCAAAATAGCTGCAGCAGCACAGTTGTGGTAAAGGGAACCGTTGGTTATGCTGCTCCAGAATATGGGATGGGGAGGGCGGTGTGGGAGCAAGGGGAT GTATACAGTTTTGGAATATTAATGCTGGAAATGTTTACAATGAGAAGACCTACAGATGGAATGTTCAGAGACGGTATGAATCTCCATGAATATGTTAAGG CTGCTGCTTTGGTGGGGAAACTTGGGATGATAATAGACCCATTTCTTCTCATGGAAGAGGAAAGGGGTGATGAAGAACGGGACAGAAGAAGGACGATGGA GATGGAGATGGAGACGGAGGAGAAGATACCGGGGTGTTTGGCGTCAGTGCTTGAAATAGGGGTGGCTTGCTCTGCGGAATCGCCGTCGGAGAGAATGAGA GTGGCGGATGTCACAAGGAGACTCGAGTCCATTAGAGATCAGTTGTTGTGCCGGTGCACACCAACTTAA
AA sequence Show only first row Show all	>Lus10033384 pacid=23172223 polypeptide=Lus10033384 locus=Lus10033384.g ID=Lus10033384.BGIv1.0 annot-version=v1.0 MASANIIIYLPYIFLFHLLQLLHVSANNHSDRLALLEFKKGITNDPHGVFNSWNDSFHFCYWQGVQCTPGNDDQRVTSLLLPQLSLAGTLSPHIGNLSFL RFINLENNSFRGQIPSQIGNLFRLRHLNMTQNTFQGNIPANLSRCSQLRILKLGGNQLVGGIPAEIGLSLSKLEILRIGTNDLTGTLPASLGNLSQLVNL GAAYNNLVGQIPDCFGRLSKLKLIAIGVNQLTGTIPLSLYNVSSLNIMTFAMNKLEGTLPENLGLTLANLAYIGVSGNNLSGTIPRSFCNASQLVDINMN RNNFVGRIPNCLGNYGGLLWVDIAVNNLGYNSTGDFDFLTSLTNCTRLERLGISLNNFGGALPDSIGNLSSTRFKELFISSNQITLLPESLENLIGLVNV EMAFNFLRGSIPSYFGNFHNLQGLDLQGNMFSGKIPESIGNLSQLFKLDLSSNRLEGLIPASLGKCTRLSSIDISSNRLSGAIYPEIMNISSSLVTLFNM SHNLLSGNLPPAIGKLTNLNAMDLSYNNLTGEIPNTIANCESLEHLFLQENSFDGIIPPSLASMKGLREVDLSKNKLSGEIPQQLENVRFLEYLNLSYNS LGGEVPNQGVFTNSSAILLMGNPQLCGGVVELDLPKCPIPQPASSSRLSSRVKLSIILVPVLILALLIAVVSFYMHRRLRKAESVSEDGIHEQFLRVSYR ELDEATDGFSSNNLLGSGGYGTVYKGKLKQVQKPVAVKVLDLQRNQACKSLAAECNALRNVRHRNLVKVVSFCSSLDNRGNEFKALVFEYMENGSLADWL HQHKKNLSMLQRLNIVIDVATALHYLHDLCEIRIVHCDLKPSNVLLDGEMVAHVSDFGQARLRDDPISQNSCSSTVVVKGTVGYAAPEYGMGRAVWEQGD VYSFGILMLEMFTMRRPTDGMFRDGMNLHEYVKAAALVGKLGMIIDPFLLMEEERGDEERDRRRTMEMEMETEEKIPGCLASVLEIGVACSAESPSERMR VADVTRRLESIRDQLLCRCTPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10033384 [exp]	0	1
AT2G46620			P-loop containing nucleoside t...		Lus10008834 [exp]	10.2	0.9673
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	16.9	0.9639
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	18.8	0.9634
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	28.1	0.9596
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	28.5	0.9586
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10023259 [exp]	31.2	0.9571
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001762 [exp]	32.8	0.9260
					Lus10040445 [exp]	35.7	0.9578
AT1G35210			unknown protein		Lus10010343 [exp]	38.1	0.9572
AT3G54200			Late embryogenesis abundant (L...		Lus10032671 [exp]	41.8	0.9568

Compare expression of checked genes

Lus10033384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.