Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49830 576 / 0 EXO84B exocyst complex component 84B (.1.2.3) AT1G10385 471 / 8e-157 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT1G10180 246 / 5e-71 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034843 [exp] 857 / 0 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10035756 [exp] 754 / 0 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 751 / 0 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 479 / 2e-159 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 459 / 3e-151 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10018297 [exp] 258 / 1e-75 AT1G10180 858 / 0.0 unknown protein Lus10040609 [exp] 258 / 3e-75 AT1G10180 854 / 0.0 unknown protein Lus10022896 [exp] 144 / 2e-35 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 137 / 1e-33 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249900 [exp] 721 / 0 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.008G009100 [exp] 708 / 0 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.016G063700 [exp] 491 / 4e-164 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.012G120000 [exp] 251 / 9e-73 AT1G10180 809 / 0.0 unknown protein Potri.015G118500 [exp] 235 / 5e-67 AT1G10180 788 / 0.0 unknown protein Potri.015G119300 [exp] 229 / 5e-66 AT1G10180 628 / 0.0 unknown protein Potri.014G195400 [exp] 154 / 7e-39 AT1G10180 215 / 8e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF08700 [flax] [poplar] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Lus10033387 pacid=23172204 polypeptide=Lus10033387 locus=Lus10033387.g ID=Lus10033387.BGIv1.0 annot-version=v1.0 ATGGCCTCGGTGAAGACCGCTCGGTCCAGGGCGGCTCCAATGAAGGAAAATGGAGCGGTGAAGACGGAGGAAGGTCTCAGCGCTTTCAAGTCCGATAAGT TCGATGCTGATTCTTATGTTCAGTCCAAATGCTCGCTCAATGACAAGGAAATAAGGCAGCTCTGCTCTTATCTTTTGGATTTGAAGAAAGCTTCTGCTGA GGAAATGCGGAAAAGTGTTTATGCCAACTATCCCGCTTTCATACGTACATCGAAAGAGATATCGGATTTGGAAGGAGAACTTTCATCTATCAGAAGCCTG CTATCTACTCAGGCTACATTAATTCATAGTTTAGCAGATGGAGTTCATATTGATCAGTTGTCTGAAAAGGTTCCCGAAGATTCCTCTGTAAATAATTTAC TGAATAGTGAGGATAGAGAACCTTCTACATTGGAGAGATGGTCAGTTGAATTTCCTGATCTCCTTGATGTCTTATTAGCTGAGAGGAGGGTCGATGAAGC TCTTACAGCCTTTGAAGAGGGCGAGCACATAGTTTCTGAGGCAAACGAAGCAAAATCATTGAGTCCTTCTGTACTCCGGTCATTGGAGACCACAATTATG CAACGGAAGCAAAAATTAGCTTATCAGCTTGCTGAAGCAGCATGTCAGCCTTCTACCCGAGGTGCTGAACTTCGGGCAGCCATTAGTGCTCTTAAAAGCC TTGGGGATGGTCCACGTGCTCATAATTTGTTACTTAGTGCACACTTTCAAAGACATGCTTTAGCATCATCAGCAGCTGCAGGTGGATTACGAGCTGCTGC AGAGTGTGTACAGATAGCTTTGGGTCATTGCTCTTTATTGGAAGCTCGCGGCTTGGCTATTTGCCCTGTGCTTTTGAAACTCTTTAGACCTAGTGTTGAA CAAGCAGTGGATGCTAATCTCAAACGGATTGAAGAGAGCACTGCAGCTATGGCTGCTGCTGATGATTGGGTACTAACTCATTCTCCAACAACCACTCGGA AGTCTGGAAGGGCTATTGCATCTCTTGGTACTGCCATTGTTTTCCAACATAAACTCACCAGCAGTGCTCATCGGTTTAACTTAATGGTTCAGGACTTTTT TGAGGATGTTACACCTCTTTTGAGTATGTTGGGTGGTCAAACACTGACGGGAGTTTTCCAAGTATTTAACTCATATATTAACATGCTTATAAAGGCATTG CCTGGTTCTATGGAAGAAGAAGCCAATTTTGAAGGTTTCGCTAATAAAATAGTCAGAATGGCTGAGACTGAAGAACAGCAGATTGCCTTGCTAGCAAATG CATCATTGTTAGCAGATGAACTGCTGCCTCGTGCAGCAATGAAACTATATCCTCCGGTTCAGACAAATTATAAGGATGATAGAAGTAGGAGACATGTTGA TAAACCAAATCGTCATCCTGAGCAACGAGAATGGAGGAAACGCCTTGTGACTGCTGTTGATAGGTTGAAAGATACTTTCTGCCGACAGCATGCACTGGAT CTAATTTTTACGGAAGATGGTGATAGTTATCTTTCTGCTGAAATGTACATCAACATGGACAATAGTAATGTAGAGGAAATAGAATGGCTTCCTTCCCCAA TATTCCAGGAACTATTCTTAAAACTGAGTAGGATGGCTAGCATAACAGCAGACATGTTTGTGGGGAGGGAAAGGTTTGCGACTTTACTGTTGATGAGACT TACGGAAACAGTAATCTTGTGGCTATCAGAAGATCAGAGCTTCTGGGACGACATTGACGAAGGACCAAGGCCACTAGGTCCTATGGGGTTACAACAGTTC TATCTCGATATGAAGTTCATATTGTGCTTTGCAACTCAAGGACGTTACTTGTCTCGAAACTTGCATCGTGTTGTCAGCGAGATCATTAACAAGGGTATGG CAGCATTCTCGGCCACAGGGATGGATCCTGACAGGGTACTCCCGGAAGACGAATGGTTTAACGAGGTATGTCAAGAAGCGATGGAAAGGTTGAGCGGGAA ACCGAAAGCCATAGACGGAGAAAGGGAACTCAATAGTCCGACAGCATCTGTGTCAGCACAATCTATGTCATCTGTTAGATCTCACGGGAGTAGCTGA
AA sequence Show only first row Show all	>Lus10033387 pacid=23172204 polypeptide=Lus10033387 locus=Lus10033387.g ID=Lus10033387.BGIv1.0 annot-version=v1.0 MASVKTARSRAAPMKENGAVKTEEGLSAFKSDKFDADSYVQSKCSLNDKEIRQLCSYLLDLKKASAEEMRKSVYANYPAFIRTSKEISDLEGELSSIRSL LSTQATLIHSLADGVHIDQLSEKVPEDSSVNNLLNSEDREPSTLERWSVEFPDLLDVLLAERRVDEALTAFEEGEHIVSEANEAKSLSPSVLRSLETTIM QRKQKLAYQLAEAACQPSTRGAELRAAISALKSLGDGPRAHNLLLSAHFQRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLAICPVLLKLFRPSVE QAVDANLKRIEESTAAMAAADDWVLTHSPTTTRKSGRAIASLGTAIVFQHKLTSSAHRFNLMVQDFFEDVTPLLSMLGGQTLTGVFQVFNSYINMLIKAL PGSMEEEANFEGFANKIVRMAETEEQQIALLANASLLADELLPRAAMKLYPPVQTNYKDDRSRRHVDKPNRHPEQREWRKRLVTAVDRLKDTFCRQHALD LIFTEDGDSYLSAEMYINMDNSNVEEIEWLPSPIFQELFLKLSRMASITADMFVGRERFATLLLMRLTETVILWLSEDQSFWDDIDEGPRPLGPMGLQQF YLDMKFILCFATQGRYLSRNLHRVVSEIINKGMAAFSATGMDPDRVLPEDEWFNEVCQEAMERLSGKPKAIDGERELNSPTASVSAQSMSSVRSHGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10033387 [exp]	0	1
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	1.0	0.8725
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	4.0	0.8275
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10014273 [exp]	7.5	0.8531
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10007815 [exp]	8.5	0.7872
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	11.0	0.8438
AT1G59590		ZCF37	ZCF37 (.1)		Lus10007746 [exp]	11.4	0.7914
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10001725 [exp]	18.6	0.7783
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	21.9	0.8261
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10035262 [exp]	25.4	0.7887
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	30.7	0.8056

Compare expression of checked genes

Lus10033387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.