Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21215 262 / 5e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G42240 92 / 3e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G13700 70 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034844 [exp] 348 / 2e-120 AT3G21215 370 / 1e-128 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249700 [exp] 276 / 8e-92 AT3G21215 376 / 9e-131 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G009400 [exp] 264 / 5e-87 AT3G21215 219 / 4e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G046600 [exp] 89 / 7e-20 AT2G42240 334 / 4e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.003G035000 [exp] 68 / 8e-13 AT3G13700 348 / 3e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G019300 [exp] 45 / 2e-05 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 42 / 0.0004 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10033388 pacid=23172100 polypeptide=Lus10033388 locus=Lus10033388.g ID=Lus10033388.BGIv1.0 annot-version=v1.0 ATGGAGCTACTTGATAAACGTCTTCGAGAAAGAAAATCAGGGTTAACTGACCATGTACGAGTTGTTGCCACCGGAGCTGGAATTCACTCTTACCACCACC AATGGCCGCCGGCTCCTACTCCACCACCGCCCTCCGCCGCTGTCGCCCCTCCTCCTTCCGTTCATCATCCTCATCCTCCTCTTGCTACGTTGGATAATGC CAACCGCGGCCCTGCGCAGGACGAGGTTCGGACGGTTTTCATCACTGGGCTGCCGGAAGATGTGAAGGAGAGGGAACTGCAGAACTTGCTGAGATGGTTG CCGGGTTATGAAGCTTCCCAGGTTAACTTCAAAGGAGAAAAGCCTATGGGTTTTGCTCTATTCTCCACTCCTCCATTTGCTATTGCTGCCAAGGATGCAC TTCAGGACATGGTTTTTGACGCCGAGTTGAGGGCGGTATTACACACTGAAATGGCCAAGAAAAATCTGTTTGTTAAAAGAGGAATAGTATCAGACACAAG TGCTTTTGATCAAAGTAAGCGATTACGAACTGGGGGTGACTATAGCCATGCTGCTTATCCCTCGCCACCTCCATTTCACCATCCTCCTCCTCCTGCTTGG GGTCACCATGGGTACATGGCTCCACCACCGCACCATTATGATCCATATGGAGGCTATCATGTGCCTCACGTACCAATGCCTGCACCTGCTCCTGTACCAG CTCCAAGTAGTTATGTTCCTGTTCAGAATACGAAGGATAATCCTCCTTGCAACACGCTGTTTATTGGGAATCTTGGAGAAAACATCAATGAAGAGGAACT GAGAGGACTATTTAGCGGCCAACCTAGTTTCAAGCAAATGAAAGTCTTGAGACAAGAAAGGCATACATATTCGAAGAATCCATTTGGGAAGAGGAAAGAT GGACCTCACCCTGCTGTTGCTTCCCCAAGCCCGAGTGGAGCTCAGTCATCTATGACATACCAGTAG
AA sequence Show only first row Show all	>Lus10033388 pacid=23172100 polypeptide=Lus10033388 locus=Lus10033388.g ID=Lus10033388.BGIv1.0 annot-version=v1.0 MELLDKRLRERKSGLTDHVRVVATGAGIHSYHHQWPPAPTPPPPSAAVAPPPSVHHPHPPLATLDNANRGPAQDEVRTVFITGLPEDVKERELQNLLRWL PGYEASQVNFKGEKPMGFALFSTPPFAIAAKDALQDMVFDAELRAVLHTEMAKKNLFVKRGIVSDTSAFDQSKRLRTGGDYSHAAYPSPPPFHHPPPPAW GHHGYMAPPPHHYDPYGGYHVPHVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENINEEELRGLFSGQPSFKQMKVLRQERHTYSKNPFGKRKD GPHPAVASPSPSGAQSSMTYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10033388 [exp]	0	1
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	4.2	0.7938
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	8.7	0.7646
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10038095 [exp]	9.0	0.7725
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	9.8	0.7674
AT1G47570			RING/U-box superfamily protein...		Lus10020903 [exp]	13.1	0.7508
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	13.9	0.7753
AT5G25510			Protein phosphatase 2A regulat...		Lus10012116 [exp]	15.1	0.7386
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	16.1	0.7606
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10025869 [exp]	21.2	0.7576
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	23.1	0.7126

Compare expression of checked genes

Lus10033388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.