Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19090 43 / 3e-05 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT5G40380 38 / 0.001 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033450 [exp] 153 / 1e-48 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10020927 [exp] 149 / 3e-47 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10009206 [exp] 106 / 2e-30 ND / Lus10015472 [exp] 61 / 1e-12 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10022828 [exp] 60 / 4e-12 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10012369 [exp] 59 / 1e-11 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10011894 [exp] 57 / 5e-11 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10028019 [exp] 56 / 2e-10 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10028980 [exp] 50 / 3e-08 AT3G21945 39 / 9e-04 Receptor-like protein kinase-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 50 / 2e-08 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.011G028100 [exp] 43 / 2e-05 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024228 [exp] 40 / 0.0003 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10033389 pacid=23172191 polypeptide=Lus10033389 locus=Lus10033389.g ID=Lus10033389.BGIv1.0 annot-version=v1.0 ATGAAGAGAAGTAGTGCTGTTGTTATTAGTACTGGGTTGATGCTGCTGCTCTTTACTTTCTCCCTTGGCGAGGAGGTCAGCGTTTGCTACTGCAACGACA ACAAGTACTCACCACAAGACCATCCAGCGGAGCTCAAACGGTACATCCCATACGTACTTGAGCAATTACATGTTGTCACGCCTCGAAATTCGACCTACGA GGACATCAAGTACCGATATGCATACCCCAGCAGTGCAAATCCTATGGTCTATGCATCTTCCTTCTGCAAGCAGTCTCCAGCTGCAGAATGCAGGCACTGT CTCAAGGTAGCCAAAAACAAGCTTCTCCATAAATGTAGACACTCTGTTGGGGGTCAATTCTATTCCGAACTTTGCTTCCTGCGCTTTGAGCTTTATGACT TCTTCCCTTAG
AA sequence Show only first row Show all	>Lus10033389 pacid=23172191 polypeptide=Lus10033389 locus=Lus10033389.g ID=Lus10033389.BGIv1.0 annot-version=v1.0 MKRSSAVVISTGLMLLLFTFSLGEEVSVCYCNDNKYSPQDHPAELKRYIPYVLEQLHVVTPRNSTYEDIKYRYAYPSSANPMVYASSFCKQSPAAECRHC LKVAKNKLLHKCRHSVGGQFYSELCFLRFELYDFFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10033389 [exp]	0	1
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	10.1	0.6146
AT4G36150			Disease resistance protein (TI...		Lus10004074 [exp]	10.8	0.6099
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10031638 [exp]	20.6	0.6062
AT5G46090			Protein of unknown function (D...		Lus10013971 [exp]	21.7	0.6121
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024619 [exp]	24.2	0.5552
AT1G11340			S-locus lectin protein kinase ...		Lus10007601 [exp]	26.5	0.6072
AT4G19770			Glycosyl hydrolase family prot...		Lus10003408 [exp]	28.6	0.5948
AT5G35870			unknown protein		Lus10001176 [exp]	28.9	0.5597
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10009746 [exp]	36.2	0.5154
AT5G48540			receptor-like protein kinase-r...		Lus10035754 [exp]	38.2	0.5447

Compare expression of checked genes

Lus10033389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.