Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04885 942 / 0 Glycosyl hydrolase family protein (.1) AT5G20950 890 / 0 Glycosyl hydrolase family protein (.1.2) AT5G20940 822 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 685 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 676 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 660 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47040 657 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 641 / 0 Glycosyl hydrolase family protein (.1.2) AT5G64570 128 / 1e-30 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G10560 122 / 1e-28 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034848 [exp] 1010 / 0 AT5G20950 823 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 907 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 881 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 873 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 869 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010656 [exp] 859 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 858 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 845 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10008434 [exp] 817 / 0 AT5G04885 796 / 0.0 Glycosyl hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G013500 [exp] 1037 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.019G037400 [exp] 941 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 927 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G153900 [exp] 916 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013700 [exp] 898 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 697 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 372 / 2e-125 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 307 / 3e-101 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 267 / 7e-86 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 238 / 6e-74 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033393 pacid=23172198 polypeptide=Lus10033393 locus=Lus10033393.g ID=Lus10033393.BGIv1.0 annot-version=v1.0 ATGTGTAGGGGTTCCAGGCTTCAGTTGTTTGGGATATTGTGGCTGTGCGCATGGGTAGTTGGGACAGAGGCAGAGACGGCGAAATACAAAGATCCGAAGC AACCAGTGACTATTCGAATTAAGGACCTAATGAGTAGAATGTCACTCGCCGAAAAGATTGGCCAGATGACCCAGCTCGATAGGGAGTCAGCCACTCCGGA GATTATGCGGACTTACTCCATAGGTAGTGTATTGAGTGGTGGAGGGAGTGCACCGCTTCCTGATGCTACTGCCAAGGATTGGATTGATATGGTAAATACG TTTCAGAAAGGATCTATGTCCAGTCGTTTAGGGATTCCAATGATATATGGTATCGATGCTGTTCATGGACACAACAATGTGTATAATGCCACAATATTCC CTCACAACGTTGGTCTTGGAGCCACCAGGCAAGTGGATCCTGACTTGGTCAAGAGAATTGGTGCTGCAACTGCTCTTGAAGCTAGAGCCACAGGGATTCC TTACGTCTTCGCACCATGCATAGCGGTCTGTAGAGACCCAAGGTGGGGACGGTGTTATGAGAGCTATAGTGAGGATCCCAAGGTTGTGGAAGCAATGACA GAGATCATACCTGGTTTACAAGGAGACATGCCTGCTCATTCTCGAAGAGGAGTTCCTTATGCCATTGGAAAGGATAAAGTAGCAGCTTGCGCTAAACATT TTGTGGGTGATGGTGGAACAACCAAGGGCCTCAATGAGAATAATACGATAATAGACAGGCATGGGTTGTTAAGCATTCACATGCCTGCCTATTCTGATTC TGTGATCAAAGGGGTTTCAACTGTTATGGTATCTTACTCTAGCTGGAACGGAGAGAAGATGCATGCTAACCGAGAGCTAATAATGGGCTTCCTGAAGGGC ACCCTTAAGTTTAAGGGGTTTGTTATCTCCGATTGGCAAGGTATTGATAGGATCACCCCAACGGCACATGAAAACTATACTTATTCTGTGCAAGAAGGGG TGCTAGCTGGCATTGACATGGTCATGCTTCCATACAACCATACTGAGTTCATTGATGACCTTACTCTCCTGGTAAAGAACAATGTCATCCCAATGGATCG CATTGATGATGCTGTACGAAGGATTCTGCTGGTGAAGTTCAATTTGGGTCTCTTTGAGAACCCTATGGCTGATCTAAGCTTTGTTAATGAACTTGGAAGC CAGGCACACAGAGACTTGGCTCGTGAGGCAGTGAGAAAATCAGCTGTGTTGTTGAAGAACGGGAAGAATGGGACTGGTCCACTATTACCTCTTCCCAAAA AGGCCTCAAGAATTCTGGTTGCTGGTACACACGCTGATAATTTGGGTTATCAATGTGGTGGATGGACTATCAACTGGCAGGGATTTAGCGGGAACAATGA TACTTCAGGAACCACCATCCTTACTGCCATACGGTCCACGGTTGATCCAAAAACAGAGGTTGTCTTCCAAGAGGATCCCAACATCCAATTCTTGGAGGGG AACAAATTTGACTATGCGATTGTGGTTGGTGGTGAGCCACCTTATGCAGAGACTGCAGGGGATAGCAGCGATCTTACAATGAAAGACCCTGGTACAAGTA CCATCAGCAATGTGTGCGGGGCTGTCAAGTGTGTAGTTGTGGTAGTATCAGGGAGACCCATTGTGATTGAGCCATACATTGGTTCAATGGATGCGCTTGT GGCAGCTTGGTTACCAGGCAGCGAAGGGCAAGGAGTGGCAGATGTCCTGTTTGGTGACTTTGGATTTACTGGGAGACTTGCCAGAACATGGTTTAAGAGT GTGGCTCAACTTCCTATGAACCTTGGAGATGCACATTACGATCCTCTCTTCCCCTTTGATTTTGGAATCAAGACTGCTGGTTTTCATGGCTCCATTGAAA GGTCAACGTCACATGGTGGAGCTAGAAATCCATGCATAGCTGTTCTTCTCATTTCTGCAATTATTGGGTTGTGGCTAACCAGCTTAATATCTTCTTAG
AA sequence Show only first row Show all	>Lus10033393 pacid=23172198 polypeptide=Lus10033393 locus=Lus10033393.g ID=Lus10033393.BGIv1.0 annot-version=v1.0 MCRGSRLQLFGILWLCAWVVGTEAETAKYKDPKQPVTIRIKDLMSRMSLAEKIGQMTQLDRESATPEIMRTYSIGSVLSGGGSAPLPDATAKDWIDMVNT FQKGSMSSRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATRQVDPDLVKRIGAATALEARATGIPYVFAPCIAVCRDPRWGRCYESYSEDPKVVEAMT EIIPGLQGDMPAHSRRGVPYAIGKDKVAACAKHFVGDGGTTKGLNENNTIIDRHGLLSIHMPAYSDSVIKGVSTVMVSYSSWNGEKMHANRELIMGFLKG TLKFKGFVISDWQGIDRITPTAHENYTYSVQEGVLAGIDMVMLPYNHTEFIDDLTLLVKNNVIPMDRIDDAVRRILLVKFNLGLFENPMADLSFVNELGS QAHRDLAREAVRKSAVLLKNGKNGTGPLLPLPKKASRILVAGTHADNLGYQCGGWTINWQGFSGNNDTSGTTILTAIRSTVDPKTEVVFQEDPNIQFLEG NKFDYAIVVGGEPPYAETAGDSSDLTMKDPGTSTISNVCGAVKCVVVVVSGRPIVIEPYIGSMDALVAAWLPGSEGQGVADVLFGDFGFTGRLARTWFKS VAQLPMNLGDAHYDPLFPFDFGIKTAGFHGSIERSTSHGGARNPCIAVLLISAIIGLWLTSLISS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04885			Glycosyl hydrolase family prot...		Lus10033393 [exp]	0	1
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	4.7	0.9626
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	5.5	0.9596
AT5G20950			Glycosyl hydrolase family prot...		Lus10034848 [exp]	7.7	0.9181
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	8.8	0.9473
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	9.2	0.9534
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10014315 [exp]	11.3	0.9501
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10018341 [exp]	14.4	0.9436
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	15.2	0.9500
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10023401 [exp]	16.9	0.9415
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10018975 [exp]	18.5	0.9228

Compare expression of checked genes

Lus10033393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.