Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16880 357 / 9e-125 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT5G04740 290 / 4e-98 ACR12 ACT domain repeats 12, ACT domain-containing protein (.1.2) AT3G01990 56 / 1e-08 ACR6 ACT domain repeat 6 (.1) AT2G03730 52 / 3e-07 ACR5 ACT domain repeat 5 (.1.2) AT5G65890 46 / 2e-05 ACR1 ACT domain repeat 1 (.1.2) AT1G69040 46 / 2e-05 ACR4 ACT domain repeat 4 (.1.2) AT1G76990 46 / 2e-05 ACR3 ACT domain repeat 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034851 [exp] 565 / 0 AT1G16880 351 / 3e-122 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10033395 [exp] 373 / 7e-131 AT1G16880 375 / 1e-131 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10034852 [exp] 360 / 1e-125 AT1G16880 372 / 1e-130 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10041543 [exp] 51 / 5e-07 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 50 / 1e-06 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10036827 [exp] 46 / 2e-05 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 44 / 9e-05 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1) Lus10011715 [exp] 43 / 0.0002 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10019192 [exp] 40 / 0.0004 AT1G69040 172 / 3e-53 ACT domain repeat 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248700 [exp] 370 / 9e-130 AT1G16880 363 / 4e-127 ACT domain repeats 11, uridylyltransferase-related (.1.2) Potri.008G010400 [exp] 365 / 6e-128 AT1G16880 359 / 1e-125 ACT domain repeats 11, uridylyltransferase-related (.1.2) Potri.008G020700 [exp] 286 / 2e-96 AT5G04740 370 / 1e-129 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.010G238300 [exp] 285 / 3e-96 AT5G04740 392 / 6e-138 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.012G083000 [exp] 62 / 9e-11 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.012G102200 [exp] 62 / 1e-10 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 61 / 2e-10 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 55 / 2e-08 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.010G138600 [exp] 53 / 1e-07 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 51 / 5e-07 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10033394 pacid=23172133 polypeptide=Lus10033394 locus=Lus10033394.g ID=Lus10033394.BGIv1.0 annot-version=v1.0 ATGGCTGCCTCGTCATTTACCGCAACCTCCAACACCTTCCGCCGTCCCTTTCCTACGATCATCAACGCCACTGTGCTCGGAGGAGCTGTCTCCTCTTCTT CCTTCCTCACCTTTGCCGCCACTCGATCTTCTTATCTTCCATCTCCCACTGTATTGTCTTGTTCTAGGAGCATAGTTGTTCCCCGAGCATCACAATCCAC TGCTGTGGAGGATGGGAGTTACTATGACATGGATGCAGTTCCAACTCCTAAGGTGATCATCGACCTGGACTCTGATCCGGATGCAACTGTTGTGGAGATT ACTTTTGGTGATCGTCTCGGAGCACTTGTGGATACTATGACGGCTCTCAAAAACCTTGGACTTAATGTGGTGAAGGGTAACGTCTTTTTGGATTCTTCAG GCAAGCATAACAGATTTTCCATCACTAAAGCTGACAGCGGTAGAAAGGTTGAAGACCCAGAACTCCTTGAGGCAATACGCTTGACGATAATTAACAATCT ACTCAAGTATCACCCTGAATCGAGTAGTAAGTTAGCCATGGGAGTCTTCTTTGGTTCACAGCCACCAAACCAGAAGGTAGATGTGGACATTGCAACCCAT ATAACCATCTCTGATGAAAGTCCTAAGCGGAGCTTACTGAACGTGGAGACAGCTGATCGTCCTGGTTTACTCGTGGACTTGGTGAAGATCATCAGCGACA CAAATATTAATGTTGAATCAGGAGAGTTTGACACCGAGGGATTGTTGGCTAAATCAAAGTTTCATATCAGCTACGGTGGTAGAGCTGTCCCTAAGCCTCG CCAGCAGGTTCTTGCGAACAGCTTGCAGTATTTCTTGAGGCGGCCATCAACAGAGGATTCCAGCTTTTAA
AA sequence Show only first row Show all	>Lus10033394 pacid=23172133 polypeptide=Lus10033394 locus=Lus10033394.g ID=Lus10033394.BGIv1.0 annot-version=v1.0 MAASSFTATSNTFRRPFPTIINATVLGGAVSSSSFLTFAATRSSYLPSPTVLSCSRSIVVPRASQSTAVEDGSYYDMDAVPTPKVIIDLDSDPDATVVEI TFGDRLGALVDTMTALKNLGLNVVKGNVFLDSSGKHNRFSITKADSGRKVEDPELLEAIRLTIINNLLKYHPESSSKLAMGVFFGSQPPNQKVDVDIATH ITISDESPKRSLLNVETADRPGLLVDLVKIISDTNINVESGEFDTEGLLAKSKFHISYGGRAVPKPRQQVLANSLQYFLRRPSTEDSSF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10033394 [exp]	0	1
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10030532 [exp]	20.4	0.7297
AT1G56420			unknown protein		Lus10031412 [exp]	46.6	0.7036
AT1G55000			peptidoglycan-binding LysM dom...		Lus10029925 [exp]	50.1	0.7013
AT3G22430			unknown protein		Lus10021918 [exp]	62.9	0.6496
					Lus10041530 [exp]	66.2	0.6776
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	74.8	0.6985
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10012102 [exp]	85.2	0.6931
AT5G15220			Ribosomal protein L27 family p...		Lus10010822 [exp]	96.9	0.6235
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10028130 [exp]	128.3	0.6355
AT5G18610			Protein kinase superfamily pro...		Lus10036499 [exp]	190.4	0.6321

Compare expression of checked genes

Lus10033394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.