Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55730 567 / 0 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 560 / 0 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 521 / 0 ATCAX6 cation exchanger 6 (.1) AT5G01490 343 / 3e-113 ATCAX4, CAX4 cation exchanger 4 (.1) AT2G38170 330 / 1e-107 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT3G51860 328 / 3e-107 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT1G53210 44 / 0.0002 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034853 [exp] 952 / 0 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10006068 [exp] 552 / 0 AT3G13320 516 / 1e-176 cation exchanger 2 (.1) Lus10027136 [exp] 536 / 0 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10009431 [exp] 427 / 4e-147 AT3G13320 404 / 3e-139 cation exchanger 2 (.1) Lus10032889 [exp] 377 / 6e-127 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10027791 [exp] 332 / 7e-109 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 323 / 3e-105 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10002490 [exp] 318 / 3e-103 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10035507 [exp] 315 / 4e-102 AT3G51860 579 / 0.0 cation exchanger 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249200 [exp] 675 / 0 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.001G469800 [exp] 559 / 0 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 556 / 0 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.016G115500 [exp] 350 / 1e-115 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 343 / 6e-113 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 323 / 2e-105 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G251200 [exp] 322 / 1e-104 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.001G375500 [exp] 43 / 0.0005 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10033396 pacid=23172041 polypeptide=Lus10033396 locus=Lus10033396.g ID=Lus10033396.BGIv1.0 annot-version=v1.0 ATGGGTTCTATAGATGAGAAAGTAACAGTTGCAGCATCAGAATCTGGTGATGAGGAGATGGAGATCCTGTTCAGTGTATCCTCCCCTAGTAGGAGGAAAT CGTCTACTTTTGACTTTGAGAGTGAGACATTGCCACTGAGTTCTTCGAATCATTCCTCCCGTACTGATCATTTGGCCAACTCCTGGATTGTCAAGCGGAT GGAGATGAGCCCGTTGCGTTCGTTTTACATTGTTTTGATTAGAGCTAAGATCAATGTGTTGCTCCCTTTTGGTCCCCTCGCAATCTTGCTTCATTACTTC ACAGGAAAGCATGTGTGGGTTTTCTTCTTTAGCTTAGTTGGGATTGTACCTCTGGCCGAACGGCTTGGTTATGCCACCGAGCAACTTGCCTACTACACTG GATCAACAGTTGGCGGTCTTCTGAATGCAACCTTTGGAAATGCGACTGAAATGATAATATCTATTTATGCACTGAAGAGTGGAATGGTGCGAGTTGTTCA GCAATCTTTATTGGGCTCCATCTTATCTAATATGCTATTGGTACTTGGATTTTCTTTCTTCACTGGTGGGATTGTTCATCACAAGAAGGTTCAGGTTTTC AACAAGGCAGCTGCTGTAGTGAACTCTGGACTATTATTAATGGCTGTGATGGGGATCATGTTTCCAGCGGTGCTTCACTTCACACGTACTGAAGTCCATT TTGGGAAGTCAGAAATGTCACTTTCAAGATTCAGTAGCTGCATTATGCTAGTGGCTTACGGAAGCTACCTCTTCTTCCAACTTAAGAGTCAGCATAATCT GTATGGCCCTATGGATGAGGGAGTCAACAATGATCTAGAAGATCAAGATGAAGAAGTACCAGAAATAACGAAGTGGGAATCCATTGGTTGGCTTGCAGTT TTGACTCTATGGATATCTGTGTTGTCTGCATACCTCGTCGATGCCATCCAGGGAGCATCTGAGTCGCTGAATATGCCTATGGCTTTTATAAGCGTGATCC TACTCCCTATCGTTGGAAATGCTGCTGAACATGCTAGTGCTATCATGTTTGCTATGAAGGACAAGCTTGACATCAGCCTTGGCGTCGCTATTGGATCCTC AACACAGATATCCATGTTTGTGATTCCATTCTGTGTCGTTGTTGGGTGGATAATGGGGCAGCCAATGGACTTGAACTTTCAACTCTTCGAGACAGCTACC CTATTTATCACTGTTCTAGTTGTGGCATTCATGCTGCAGGAAGGAACTTCTAACTACTTCAAAGGCCTTATGCTCATCCTGTGCTATCTTATCGTTGCAG CGAGTTTCTTCGTACATGTTGACCATTCGAGCGGAAATCCGACTTGCTCCAATAGAAGTGGAATGCTGTTTTTATTACACGTGGGGAATCAGGAGAAGTG CGTCCCTTATAAAGCTGGGAAATTTTGTTGCTACGGCGATTGTCAAACGTCCTGCTCCGGAAGTCTTAGGGATGGTGATGATATGATGGCTAAGACCACA GTTGCATTCTACATTTTTGTCTTGTTGGTAGAGAGCTTGGTTTGTTGGCATCAATGGCTGGCTTTCCTTGGAAGTTCTTCTCCAGCACAAATTGTGACTT GGCTGCTGCACTAA
AA sequence Show only first row Show all	>Lus10033396 pacid=23172041 polypeptide=Lus10033396 locus=Lus10033396.g ID=Lus10033396.BGIv1.0 annot-version=v1.0 MGSIDEKVTVAASESGDEEMEILFSVSSPSRRKSSTFDFESETLPLSSSNHSSRTDHLANSWIVKRMEMSPLRSFYIVLIRAKINVLLPFGPLAILLHYF TGKHVWVFFFSLVGIVPLAERLGYATEQLAYYTGSTVGGLLNATFGNATEMIISIYALKSGMVRVVQQSLLGSILSNMLLVLGFSFFTGGIVHHKKVQVF NKAAAVVNSGLLLMAVMGIMFPAVLHFTRTEVHFGKSEMSLSRFSSCIMLVAYGSYLFFQLKSQHNLYGPMDEGVNNDLEDQDEEVPEITKWESIGWLAV LTLWISVLSAYLVDAIQGASESLNMPMAFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVIPFCVVVGWIMGQPMDLNFQLFETAT LFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDHSSGNPTCSNRSGMLFLLHVGNQEKCVPYKAGKFCCYGDCQTSCSGSLRDGDDMMAKTT VAFYIFVLLVESLVCWHQWLAFLGSSSPAQIVTWLLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10033396 [exp]	0	1
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10034853 [exp]	5.7	0.8812
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10041121 [exp]	20.1	0.8729
AT5G07630			lipid transporters (.1)		Lus10038931 [exp]	21.2	0.8746
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	21.6	0.8935
AT4G27290			S-locus lectin protein kinase ...		Lus10014808 [exp]	23.1	0.8693
AT3G26020			Protein phosphatase 2A regulat...		Lus10037057 [exp]	23.9	0.8927
AT4G23895			Pleckstrin homology (PH) domai...		Lus10032387 [exp]	27.7	0.8886
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10032717 [exp]	28.0	0.8826
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	28.7	0.8909
AT3G04600			Nucleotidylyl transferase supe...		Lus10018331 [exp]	33.6	0.8858

Compare expression of checked genes

Lus10033396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.