Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10660 254 / 5e-77 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G23580 244 / 8e-75 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT2G38910 244 / 9e-74 CPK20 calcium-dependent protein kinase 20 (.1) AT5G04870 244 / 2e-73 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT4G23650 241 / 4e-73 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) AT3G20410 241 / 6e-73 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G04720 241 / 8e-73 CPK21 calcium-dependent protein kinase 21 (.1) AT5G19360 239 / 3e-72 CPK34 calcium-dependent protein kinase 34 (.1) AT5G12180 239 / 3e-72 CPK17 calcium-dependent protein kinase 17 (.1) AT1G50700 236 / 3e-71 CPK33 calcium-dependent protein kinase 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034860 [exp] 998 / 0 AT3G10660 254 / 6e-77 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10017537 [exp] 255 / 4e-79 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Lus10008958 [exp] 254 / 2e-78 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 256 / 7e-78 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10016200 [exp] 246 / 3e-74 AT2G38910 868 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10029346 [exp] 245 / 4e-74 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10040071 [exp] 243 / 1e-73 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10021531 [exp] 242 / 2e-73 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017911 [exp] 241 / 3e-73 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247400 [exp] 841 / 0 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.008G011541 [exp] 666 / 0 AT3G10660 201 / 7e-58 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.001G097400 [exp] 255 / 2e-78 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 254 / 5e-78 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.008G014700 [exp] 249 / 2e-75 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 248 / 4e-75 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G199400 [exp] 248 / 5e-75 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.016G066700 [exp] 245 / 1e-73 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.016G065700 [exp] 244 / 1e-73 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.001G274700 [exp] 242 / 2e-73 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10033400 pacid=23172229 polypeptide=Lus10033400 locus=Lus10033400.g ID=Lus10033400.BGIv1.0 annot-version=v1.0 ATGGGGAAGGAAACGAAGAGGCTAGTAGATGAATATGAAGTAGCAGAAGTCCTCGGGAAGGGAGGATTCTCTGTTGTCAGGAAAGGAATCAGGAGACCCA ATTCTGCTCTAGACACAAGAACACCACCACCAGCAGACCAAGTTGCAATTAAAACCCTTAAGAGACTCCAAAACCCTGCAATTCCAGGCAGGGCTGGACC CACCCTCCCACTGTGGAAGCATCAGGCCACCGTCTCCGACGCCTTGCTCACAAACGAGATCCTAGTCATGAGGAAAGTCGTTGAAAAAGTCTCCCCTCAT CCGAATGTTATTGACCTCTACGATGTGTATGAGGATCAGAATGGGGTCCATCTTGTCCTCGAACTCTGCTCGGGAGGGGAGCTCTTTGATCGGATTGTTG GGAGGAAAGACAGGTACTCGGAGAGGGAGGCGGCGGCGGTCGTCAGGCAGATAGCGAAAGGTCTGGAGGCTCTTCATGGAGCTAATATTGTGCACAGGGA CTTGAAACCTGAGAATTGTTTGTTCTTGAATGGGAGTGATGACTCTGCTCTTAAGATTATGGATTTTGGGTTGAGTTCTGTGGAGGAATTCACTGATCCT GTTGTTGGGTTGTTTGGATCTATTGATTATGTGTCCCCTGAGGCGTTGTCGCGAGGGAGAGTCTCTTCCAAGAGTGATATGTGGTCTCTCGGTGTCATCC TCTACATTTTGCTGTCAGGGTACCCTCCTTTCATTGCACAGGCAAACAGGCAGAAGCAGCAGATGATACTTGCTGGTGATTTCAGTTTCGACGAGCGGAG TTGGAAGCAAATTACATCGTCTGCAAAGCAATTGATCACTGACCTTCTGCAAGTTGATCCTCACAGAAGACCAAGTGCTTTCGATGTTCTGAATCATCCA TGGGTGACAGGAGACTCGGCAAAAGAGGAGCGAATGGACCCAGAGGTCGTCACCAGGCTGCAGAGGTTCAATGCTCGACGCAAGCTCCGTGCAGCGGCCA TTGCTAGTGTGTGGAGCAGCACAATCTTCCTGAGAACCAAGAAGCTCAGATCTTTGCTGGGATCTCATGATCTCAACGAGAAAGAGCTAGAGAACCTGAG AGTGCACTTCAAGAAACTATGTGCCAAGGGTGACAATGCAACTCTGCCAGAGTTCGAGGAAGTGCTGAAGGCTATGAAAATGTCTACATTAGTCCCTCTG GCCCCTCGAATCTTCGACCTCTTCGACAACAATCGTGATGGAACAGTTGACATGAGGGAGATCCTATGTGGGTTCTCAAGCCTCAGGAACTCCACCGGAG ATGATGCTCTCCGTTTATGTTTCCAGATGTATGATATAGACAGGTCAGGATGCATTACGAAGGAAGAAGTAGCCTCAATGCTTCGCGCCTTGCCAGTGGA ATGTCTGCCGGCAGATGTGACCGAACCTGGGAAGTTGGACGAGATATTTGACAGGATGGATGCGAACAGTGATGGGAAAGTGAGTTTCGAAGAGTTTAAA GCTGCAATGCAGGTTGACAGCTCTCTCCAGGATGCTCTCCTCTCATCTCTGCGTCAACAATAA
AA sequence Show only first row Show all	>Lus10033400 pacid=23172229 polypeptide=Lus10033400 locus=Lus10033400.g ID=Lus10033400.BGIv1.0 annot-version=v1.0 MGKETKRLVDEYEVAEVLGKGGFSVVRKGIRRPNSALDTRTPPPADQVAIKTLKRLQNPAIPGRAGPTLPLWKHQATVSDALLTNEILVMRKVVEKVSPH PNVIDLYDVYEDQNGVHLVLELCSGGELFDRIVGRKDRYSEREAAAVVRQIAKGLEALHGANIVHRDLKPENCLFLNGSDDSALKIMDFGLSSVEEFTDP VVGLFGSIDYVSPEALSRGRVSSKSDMWSLGVILYILLSGYPPFIAQANRQKQQMILAGDFSFDERSWKQITSSAKQLITDLLQVDPHRRPSAFDVLNHP WVTGDSAKEERMDPEVVTRLQRFNARRKLRAAAIASVWSSTIFLRTKKLRSLLGSHDLNEKELENLRVHFKKLCAKGDNATLPEFEEVLKAMKMSTLVPL APRIFDLFDNNRDGTVDMREILCGFSSLRNSTGDDALRLCFQMYDIDRSGCITKEEVASMLRALPVECLPADVTEPGKLDEIFDRMDANSDGKVSFEEFK AAMQVDSSLQDALLSSLRQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	0	1
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	4.1	0.9527
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	4.2	0.9496
AT2G36090			F-box family protein (.1)		Lus10017006 [exp]	4.7	0.9354
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	5.9	0.9435
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	6.3	0.9440
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	6.5	0.9493
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	6.9	0.9346
AT5G13500			unknown protein		Lus10036037 [exp]	7.1	0.9315
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	7.3	0.9423
AT2G20030			RING/U-box superfamily protein...		Lus10034953 [exp]	7.7	0.9365

Compare expression of checked genes

Lus10033400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.