Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50350 54 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034861 [exp] 816 / 0 AT5G50350 58 / 1e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247100 [exp] 406 / 2e-135 AT5G50350 55 / 1e-07 unknown protein Potri.008G012000 [exp] 391 / 1e-129 AT5G50350 54 / 3e-07 unknown protein Potri.012G094200 [exp] 92 / 1e-19 AT5G50350 234 / 3e-69 unknown protein Potri.015G091500 [exp] 91 / 7e-19 AT5G50350 229 / 1e-67 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033401 pacid=23172149 polypeptide=Lus10033401 locus=Lus10033401.g ID=Lus10033401.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCTGCTTTCAAATCCACTTCCAGGAGAGGACCCACTCGTCCCTCTCCCTCTTCCTCCTCAAAGAATTCATCTTTATCCGATAAGGAATCCA ACTCTACCACAGGCACTTCCAAATCGGCGCCGCCGTATGCTCTCCGCCGATCAAGAAGTGTAAGCGCCGCCGCAAGAAACCCACGCCCGAACACTTCCTC CTCCTACTCTTCTTCCTCTACCGCTTCAGATTTCTTGATTACCAGAGAGAACCCACTCTACTCGTCCAATTCCTCATCCCCTCCCGACAGGGATATAACC AAAGCTCAGGACTTTCCAATTCTTGGTTCCAAGTTAAAGGAGGAGTCAATTCCCAAGCTATCAAAGCCAAATGGTCCTTCTGATTCTGATATCAGGAGAG GAAGATCTATGTCCAGAACGGCAGACGCTGTCAAGCCTTCAGCAGTTCCTGCCAAAGGGGAAACCGAGCTTGAGAGAGAGAAGCCTATCCAGGGTGGATA TCAGCCACCGCCGATCTCGCTCTGTAGTGATGCAGAAGTTAGAAGAAGCTTGCCTACACTGCCTAGAAATGAGAGTTCTGCTAGTGGAGTGAAGGGTGTG GGGAGAAGCAGTGTTCAATCCGATGGTTCAGCTGCAACTTTGCCTTCTTCACCGACTTATAGTTGGGAAGATGCAACTTTAGGAGACGCGGTTACGGACG CTGAAGAGAAAACTAGCAAAGCTGTATGTGAGCAAATGAAGGCATCCCAAGTAGATAACTTGGGATCTGATACCTCTGATCGTATATATGAAACTGTCCG ATCTGAAGTCAGACGTGCTATTGCTGACATACAAGGTGACCTTGAAACTGCCATTCAAAGGAGTTCAATTGGTAGTGCTGATATAACTGATATTCCTCCG GACTTAGTGAATCCAAGTGCAGTTGAATTGGTTCTGGACATCAGAAGAGAATACGCCACAAAGCTAGAACAGTCCCATGAAAGGGCTATGAAACTTCGGG CAGATCTAGCTGTTGAGGAACACCGTGGTCTGGAGCTGAGTAGAATCTTAAAGGAAGTGCTCCCAGACCCTAAGGCCTCTAATGGCCGCAAGCCTCGAGT TGGAAGAAAATCTAGCATGGAGAGAAGGAAGATGTCCAAACGGTTAACAGAAGAAGCCATGGCTTACTTTGACGAATGTGTCTCACTATCAACTTTCGAC AGTTCTGACTTTTCGTCTCAAGAGGAGCCATCGTTGAGATTTGTTGGGACTCATGTTGCTGATCGTTCTTCTTTCTCCCCGGCAACCCCTAGCATGACAG CGGATAGTGAATTGAAAAATGTTATTAATGATAAGGAACCAGAAAGTATGTGGAGCGGCAGGGCATCAGGGCTATCAGCTGGCAGCAGCAAGGTGGAGGA GCCTATAGCAGGCGAAGTTAGCATCAGCAGCGCCGATACAAACTCAGCTCGAAGCTTTCAGTTTTCCTTCAGACGCAATTCAAATAACAGTTTAGAAATT CAGCAAGACATTGAGAAATACACCAAAGGGTTGGGAAAAGCCATAGAAAGATTGGACATAGACAGTCAGAGTTGTAATGATCATGATGTGGAGGAGTACG AGCTGCAGTCATTGCAGCAAAGTATGCTGTTTGACAGGGTTTTGTTGAGGAACAGAATAGAGTCTGGTAGCATGCTGTTATGCAGCAGTGAAGGGTTTGG AACCTGGACTTGA
AA sequence Show only first row Show all	>Lus10033401 pacid=23172149 polypeptide=Lus10033401 locus=Lus10033401.g ID=Lus10033401.BGIv1.0 annot-version=v1.0 MAVSAFKSTSRRGPTRPSPSSSSKNSSLSDKESNSTTGTSKSAPPYALRRSRSVSAAARNPRPNTSSSYSSSSTASDFLITRENPLYSSNSSSPPDRDIT KAQDFPILGSKLKEESIPKLSKPNGPSDSDIRRGRSMSRTADAVKPSAVPAKGETELEREKPIQGGYQPPPISLCSDAEVRRSLPTLPRNESSASGVKGV GRSSVQSDGSAATLPSSPTYSWEDATLGDAVTDAEEKTSKAVCEQMKASQVDNLGSDTSDRIYETVRSEVRRAIADIQGDLETAIQRSSIGSADITDIPP DLVNPSAVELVLDIRREYATKLEQSHERAMKLRADLAVEEHRGLELSRILKEVLPDPKASNGRKPRVGRKSSMERRKMSKRLTEEAMAYFDECVSLSTFD SSDFSSQEEPSLRFVGTHVADRSSFSPATPSMTADSELKNVINDKEPESMWSGRASGLSAGSSKVEEPIAGEVSISSADTNSARSFQFSFRRNSNNSLEI QQDIEKYTKGLGKAIERLDIDSQSCNDHDVEEYELQSLQQSMLFDRVLLRNRIESGSMLLCSSEGFGTWT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50350			unknown protein		Lus10033401 [exp]	0	1
					Lus10011106 [exp]	1.0	0.8964
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014461 [exp]	5.0	0.8497
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	6.2	0.8601
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031890 [exp]	9.5	0.8619
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10028579 [exp]	16.0	0.8707
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	18.9	0.8547
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10024589 [exp]	21.1	0.8788
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10015064 [exp]	24.6	0.8153
AT3G24460			Serinc-domain containing serin...		Lus10033091 [exp]	28.2	0.8354
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	35.1	0.8527

Compare expression of checked genes

Lus10033401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.