Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18440 139 / 4e-36 AtNUFIP nuclear FMRP-interacting protein, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034863 [exp] 347 / 8e-114 AT5G18440 192 / 7e-55 nuclear FMRP-interacting protein, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G012250 [exp] 122 / 3e-30 AT5G18440 169 / 2e-47 nuclear FMRP-interacting protein, unknown protein Potri.010G246500 [exp] 117 / 8e-28 AT5G18440 202 / 1e-57 nuclear FMRP-interacting protein, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033402 pacid=23172209 polypeptide=Lus10033402 locus=Lus10033402.g ID=Lus10033402.BGIv1.0 annot-version=v1.0 ATGAGGGGACGACCTAATCTTTCTTTCCGTCCTCGGCCTCCGCTTCCCACTCAACCTCAGTCCAATGTTAATCCTGCCGCACCGGGGACTTCACAATCAC AGCTGTGCCGCCTCGTGGTTTTGTTACCTGTAAAGGGTTTTCCTGGCAACCCTTCACAAGGAAATCCACCAAACATGTTTCAGAACGCAGCTCCGATGCA ACCTTCTCAGATGCGTGGAGTAAATCCTCGAACTTTGAACAATGGGCAGCTCATACCTAATAATAATATGCCTCCGCCAATGATGATGATGCAGCAGCCA GGTCCCTTCAATGCTCCTATGATGATGCCTCCACAGCTCAATCCAGGGTTTGTTCCTAATCCAATGTTCATGAACCAGCAAATGAACTTTCAACAACAAG GGCAGTTGGTTCTACAGCTTGCTAGCTTGGTTCAGCAACTCAGTCAGAATGGTGGTCTCTTCAACATTCCGCCCAATCCAATGCAGAATATGAATCCTTC TATGTTGCCTTTACAAATGCCTAATCTTAATCAAGTTCCGAATCCAAACATTTTCCCAAATCAGATGCTTGGTGCTGGGCAGCAACCTATTCCCAATCAG CAGAACTTTGTGATGCAACAACAACAACAACCAATGGGTGCAAATTTGTCTAATAGCTCGCCTGCTACTACACAGTCTGGACCGGGGAACCCTTCTGCAA ATCAGCAGAGTTTCCAGCCGCAGTCTTCTCCCTTCTCTGGACAGCAGAAGCAAGCTCTAAAAGTAGCAGATGCTGAGGCCATTAAGAAAGAAGCCCAAAT GCGCCGAGAGCAACTGAAGGAAGTTCTGGCAAAGCAGGCTGAATTGGGAGTAGAAGTAGCAGAAGTTCCATCGTATTACTTGTTGGATTCAGAAAAGCAA GTTAATGATCAAGAGGGAGACGGTAAATGGCAGAAAAAGAAAGGAAGGTTCCAACAGAAAAGGGAAAGACGCAACAAAAGAGGCCAGAAGTTCGGTAACC AAGCGACAGCAAGCCATGAATCGTCAGACATTGCGGCCCCTAAAGTGAAAGAGCCTACACTTCTGCAAAAGCTGCTGAGTGAAGACATAAAGAAAGACAA CCAAAGATTGTTGCAGTCGTTTCGGTTCATGGAAATGAACTCTTTCTTCCAAGATGGGCCGGGGAAGCCTTTGAGTTTTCCAAAGGTAGTCGTTCAAGAA GACGGTATCGAGACTACAATATTCGAAGATGTGAAGCCTGAAGAAGTAGAGGATGAGACAGGGACTGATATATTTCAGGGTGGTGATGAGGAAGAGCATG ATGATAACGATGAAGAAGACCAACAGATGAAACCAGGGGATAGTTTATCTCAGGGGAAAAGGAATCTCGTTAAGGAGATTGTGGTGACGGAAGAGGAAGA AGGAGAGATCATTAACTGA
AA sequence Show only first row Show all	>Lus10033402 pacid=23172209 polypeptide=Lus10033402 locus=Lus10033402.g ID=Lus10033402.BGIv1.0 annot-version=v1.0 MRGRPNLSFRPRPPLPTQPQSNVNPAAPGTSQSQLCRLVVLLPVKGFPGNPSQGNPPNMFQNAAPMQPSQMRGVNPRTLNNGQLIPNNNMPPPMMMMQQP GPFNAPMMMPPQLNPGFVPNPMFMNQQMNFQQQGQLVLQLASLVQQLSQNGGLFNIPPNPMQNMNPSMLPLQMPNLNQVPNPNIFPNQMLGAGQQPIPNQ QNFVMQQQQQPMGANLSNSSPATTQSGPGNPSANQQSFQPQSSPFSGQQKQALKVADAEAIKKEAQMRREQLKEVLAKQAELGVEVAEVPSYYLLDSEKQ VNDQEGDGKWQKKKGRFQQKRERRNKRGQKFGNQATASHESSDIAAPKVKEPTLLQKLLSEDIKKDNQRLLQSFRFMEMNSFFQDGPGKPLSFPKVVVQE DGIETTIFEDVKPEEVEDETGTDIFQGGDEEEHDDNDEEDQQMKPGDSLSQGKRNLVKEIVVTEEEEGEIIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10033402 [exp]	0	1
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Lus10031064 [exp]	10.0	0.7896
AT1G14810			semialdehyde dehydrogenase fam...		Lus10030759 [exp]	15.7	0.8308
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	16.5	0.8394
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	18.7	0.8311
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	32.2	0.8246
AT2G37560		ATORC2	origin recognition complex sec...		Lus10025330 [exp]	33.4	0.7663
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10002542 [exp]	33.8	0.8209
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	34.1	0.8059
AT5G67610			Uncharacterized conserved prot...		Lus10019140 [exp]	37.1	0.8014
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10021962 [exp]	38.2	0.8159

Compare expression of checked genes

Lus10033402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.