Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39840 1004 / 0 ATP-dependent RNA helicase, mitochondrial, putative (.1) AT4G14790 403 / 1e-131 ATSUV3, EDA15 embryo sac development arrest 15, ATP-dependent RNA helicase, mitochondrial (SUV3) (.1) AT1G59760 48 / 2e-05 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT2G06990 46 / 0.0001 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 44 / 0.0007 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034868 [exp] 196 / 3e-59 AT5G39840 112 / 3e-30 ATP-dependent RNA helicase, mitochondrial, putative (.1) Lus10034867 [exp] 150 / 9e-43 AT5G39840 169 / 1e-50 ATP-dependent RNA helicase, mitochondrial, putative (.1) Lus10024454 [exp] 48 / 3e-05 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10027599 [exp] 48 / 4e-05 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10007442 [exp] 45 / 0.0003 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10017528 [exp] 44 / 0.001 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081900 [exp] 1083 / 0 AT5G39840 1050 / 0.0 ATP-dependent RNA helicase, mitochondrial, putative (.1) Potri.010G084100 [exp] 401 / 7e-131 AT4G14790 770 / 0.0 embryo sac development arrest 15, ATP-dependent RNA helicase, mitochondrial (SUV3) (.1) Potri.004G228700 [exp] 48 / 2e-05 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 46 / 0.0001 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 44 / 0.0007 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF12513 [flax] [poplar] SUV3_C Mitochondrial degradasome RNA helicase subunit C terminal
Representative CDS sequence Show only first row Show all	>Lus10033404 pacid=23172049 polypeptide=Lus10033404 locus=Lus10033404.g ID=Lus10033404.BGIv1.0 annot-version=v1.0 ATGGCAAAGTCCTCTCTTTCGTCTCTGTTACGGCTTTGTAAGTCCAAACCCACGGGTTCCAGAACCAGGGTTCTGCATTCGGTTCAAAATTTGCAATCTT TGAGACAATTTGACAATACTCGCCGCATTTTCCCCTCCTCTGGCGTTCCTTATCGTCAATTCTCCACGACCTTGATTGAGCTACAACGATTTTTCTCCAA GGGCTCCAGATATGGATGCTTTAGCACTGCTGATGTAAGGCTGTTTTCTACGGAACGGGATGCCCTTAACGGACAAAATGATGATGAGGGCATTAGCCAA GACACTGATGTGAACGCTGGGGTTAGGGCAGACAACGAGAATGTAGTGAAAAGCCATGCGCCTGATCATGATGCTGATGTGAGTGATTTCCAGGATGATC ATCACATTGGTGATGCTGTTGGCAGCGACAAAGTTGTTCTGAAAAGGAATATTGCTTTATCTGATCCTATAGACTTGTATAAGGAGCTCAGAGATTCTGA GGGGCATGGCGACCAGTTAACACGATCTGACTGGGGTACTCTGCAGGATGTATTCTCTTGCTTTGCGAATTCGGGTTGGGCAGCTAATCAGGCACTTGCA GTCTATATTGGCATGTCATTTTTCCCAAGAGCTGTTGGAGAGTTCAGGGATTTTTTCGTTTCCAAGTGTTCTGATGAGGTTGGGCTGCACTTGGTGTCCC TTGGTCCGTGTGATGATGCTGTCAGGTTCCTTTTCCCAATATTTGCTGAATACTGTATAGAAGAGTTCCCTGATGAGATTAAGAGTTTCCGAGCTATGCT TTTGTCAGCAGACCTTACAAAGCCGGACACTTGGTTTCCTTTCGCTAGGGCAATGAAACGTAAGATCGTGTACCATTGTGGCCCAACAAACAGCGGAAAG ACTTACAATGCACTGCAGCGATTTATGGAAGCAAAAAAGGCTATTTATTGCAGCCCGTTAAGGCTCTTGGCCATGGAGGTTTTTGATAAGGTGAATGCAC TTGGGGTTTATTGTAGTCTTCTCACAGGTCAAGAAAAGAAACAGGTTCCTTTTGCAAACCACGTTGCTTGTACTGTGGAAATGGTGTCCACTGAGGAGAT GTATGATGTAGCCGTCATTGATGAGATCCAAATGATTGCAGACTCATCCAGAGGCTTTGCCTGGACGAGAGCATTGCTCGGGATGAAGGCTGATGAAATT CATCTATGTGGAGATCCAAGTGTACTTGACATTGTCAGAAAGATTTGTGCAGAAACTGGAGATGAATTGTATGAACACCGTTATGACCGGTTCAAACCGT TGGTTGTTGAAGCGAAAACCTTGCTGGGAGATCTGAAAAATGTCAACTCTGGTGATTGTGTCGTTGCATTTTCAAGGAGAGAAATTTTTGAGGTAAAGTT GACAATTGAGAAGAACACTAAGCATCGATGTTGTGTTATTTACGGTGCATTGCCGCCCGAGACTCGAAGACAGCAGGCTAACTTATTCAATGATCAGAAC AACGAGTTTGATGTGTTAGTTGCAAGTGATGCAATTGGGATGGGTTTGAATCTTAATATTAGGAGAGTAGTGTTTTACAATCTCTCCAAATACAACGGTG ACAAGATGGTACCTGTTCCAGCAAGTCAGGTCAAGCAGATTGCAGGAAGAGCTGGTAGGAGAGGAAGTCGTTTTCCAGATGGACTCACTACCACCTTGCA TTTGGATGATCTTGCCTATCTGATTGAGTGCTTAAAGCAACCTTTTGAGGAAGTTAAGAAAGTAGGACTCTTCCCCTTTTATGAGCAGGTTGAATTATTT GCAGCACAGCTTCCTGGTCTTACCTTTGCTAAGATGCTAGAAAAATTTGGTGAAAGTTGCCGTCTTGATGGGCTCTACTTTTTGTGTAAGCATGGTCACA TAAAGAAGGTAGCAAATATGTTGGAGAGAGTCGCAGGTTTATCTCTCAAAGATCGTTTCAACTTTTGTTTTGCTCCCGTTAATATTAGAGACCCAAAAGC AATGTACCATCTTTTAAGGTTTGCTTCGGGTTTTGGTCGGAAAGTACCTGCAAGTATAGCAATGGGTATGCCAAGGAGTTCTGCCAGGAATGACTCTGAG CTCCTGGATATGGAGACAAAACATCAAGTTCTGTCAATGTACCTATGGTTGTCTCATCAATTTGACCCTGAAAGTTTTCCACATGTAAAGAAGGCTGAAG CCATGGCGTCAGACATTGCTGATTTGTTAGGTCAATCTCTTATTAAAGCAAACTGGAAACCAGAAACAAGACAGACTGCTGGCAAACCAAAACCTCAAAA GAAAGATGAAGACGGTCACGAGAGGCCTAAATCACTTATCAGATCGTTTGTAGAGTAA
AA sequence Show only first row Show all	>Lus10033404 pacid=23172049 polypeptide=Lus10033404 locus=Lus10033404.g ID=Lus10033404.BGIv1.0 annot-version=v1.0 MAKSSLSSLLRLCKSKPTGSRTRVLHSVQNLQSLRQFDNTRRIFPSSGVPYRQFSTTLIELQRFFSKGSRYGCFSTADVRLFSTERDALNGQNDDEGISQ DTDVNAGVRADNENVVKSHAPDHDADVSDFQDDHHIGDAVGSDKVVLKRNIALSDPIDLYKELRDSEGHGDQLTRSDWGTLQDVFSCFANSGWAANQALA VYIGMSFFPRAVGEFRDFFVSKCSDEVGLHLVSLGPCDDAVRFLFPIFAEYCIEEFPDEIKSFRAMLLSADLTKPDTWFPFARAMKRKIVYHCGPTNSGK TYNALQRFMEAKKAIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKQVPFANHVACTVEMVSTEEMYDVAVIDEIQMIADSSRGFAWTRALLGMKADEI HLCGDPSVLDIVRKICAETGDELYEHRYDRFKPLVVEAKTLLGDLKNVNSGDCVVAFSRREIFEVKLTIEKNTKHRCCVIYGALPPETRRQQANLFNDQN NEFDVLVASDAIGMGLNLNIRRVVFYNLSKYNGDKMVPVPASQVKQIAGRAGRRGSRFPDGLTTTLHLDDLAYLIECLKQPFEEVKKVGLFPFYEQVELF AAQLPGLTFAKMLEKFGESCRLDGLYFLCKHGHIKKVANMLERVAGLSLKDRFNFCFAPVNIRDPKAMYHLLRFASGFGRKVPASIAMGMPRSSARNDSE LLDMETKHQVLSMYLWLSHQFDPESFPHVKKAEAMASDIADLLGQSLIKANWKPETRQTAGKPKPQKKDEDGHERPKSLIRSFVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	0	1
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	1.0	0.9582
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10040321 [exp]	2.0	0.9582
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	3.0	0.9566
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	4.5	0.9427
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	5.9	0.9401
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	6.0	0.9300
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	6.0	0.9402
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	8.1	0.9425
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001742 [exp]	8.5	0.9363
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	10.2	0.9120

Compare expression of checked genes

Lus10033404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.