Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17770 359 / 2e-125 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT5G20080 204 / 5e-64 FAD/NAD(P)-binding oxidoreductase (.1) AT1G37130 163 / 4e-45 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 158 / 1e-43 GNR1, NIA1 nitrate reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034869 [exp] 473 / 2e-170 AT5G17770 280 / 3e-94 NADH:cytochrome B5 reductase 1 (.1) Lus10026774 [exp] 390 / 6e-138 AT5G17770 425 / 1e-151 NADH:cytochrome B5 reductase 1 (.1) Lus10008407 [exp] 389 / 5e-137 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1) Lus10020310 [exp] 388 / 8e-137 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 380 / 1e-133 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10014491 [exp] 198 / 3e-62 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10030059 [exp] 196 / 6e-61 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Lus10038977 [exp] 169 / 2e-47 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10027270 [exp] 169 / 3e-47 AT1G77760 1380 / 0.0 nitrate reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246800 [exp] 428 / 9e-153 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.009G157000 [exp] 412 / 1e-146 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.004G194400 [exp] 410 / 7e-146 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 374 / 2e-131 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.006G218600 [exp] 200 / 1e-62 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.005G172400 [exp] 169 / 2e-47 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 166 / 2e-46 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.015G068500 [exp] 77 / 8e-18 AT5G17770 104 / 1e-28 NADH:cytochrome B5 reductase 1 (.1) Potri.007G072750 [exp] 40 / 7e-05 AT5G17770 39 / 5e-05 NADH:cytochrome B5 reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033405 pacid=23172043 polypeptide=Lus10033405 locus=Lus10033405.g ID=Lus10033405.BGIv1.0 annot-version=v1.0 ATGCAGAAATTCATCATCTTGCCCTCTGGTTTTGACATGAAGGATGTGTCATCAATTCCTCATTCACAACTGCTGCCGGTGTTTGTTACTCTGGTCTCAG TCTCTGTTGCTCTTGCTTGGCATTATTACACCAGAAAGCCCAAAGGCTGCTTAGACCCTGAAAAATTCCAGGAGTTCAAGCTGGTTAAGAAAACAGCAGT CAGCCCCAATGTTGCCAAGTTCAGATTTGTTCTTCCTAGTGCAAATTCCATCTTGGGCCTTCCTGTTGGATATCACCTCGTTTGCAGAGGACAGGACAGA GAAGGCAAAGAAGTGACCAGGAAGTACACTCCAGTCACCTTGGATTCTGACGTTGGCTATTTTGAACTCGTTATCAAAATGTACCCACATGGAAGGATGT CTCATCATTTCAGGGAGATGCAGGAAGGCGACTATCTCGCTGTAAAAGGACCTACGGGGCGATTCAGCTACAAACCTGGTCAAGTGCGAGCTCTCGGGAT GATCGCTGGAGGATCTGGAATTACCCCTATGTTCCAGGTGACTCGAGCCATATTAGAGAACCCGAAAGACAAAACAAATCTGTCTCTCATCTACGCCAAC ACAACATTTCAGGACATTCTGTTGAAGGCGGAACTGGATGGTTTCGCCAGAAGATTCCCGAGTCGTTTCAAGGTATATTATGTGCTGAGTCAGCCTCCTA CTGAAGGATGGAATGGCGGCATAGGTCGTGTAACCAAGCAAATGATACAAAGTTACTGCCCGCCACCAACTCCTGACATCCAGGTTCTAAGGTGTGGGCC ACCCAGCATGAACAAGGCAATGGCTGCTTATATGAATGAACTTGGTTACACCGCAAATATGCAGTTTGAGTTCTAA
AA sequence Show only first row Show all	>Lus10033405 pacid=23172043 polypeptide=Lus10033405 locus=Lus10033405.g ID=Lus10033405.BGIv1.0 annot-version=v1.0 MQKFIILPSGFDMKDVSSIPHSQLLPVFVTLVSVSVALAWHYYTRKPKGCLDPEKFQEFKLVKKTAVSPNVAKFRFVLPSANSILGLPVGYHLVCRGQDR EGKEVTRKYTPVTLDSDVGYFELVIKMYPHGRMSHHFREMQEGDYLAVKGPTGRFSYKPGQVRALGMIAGGSGITPMFQVTRAILENPKDKTNLSLIYAN TTFQDILLKAELDGFARRFPSRFKVYYVLSQPPTEGWNGGIGRVTKQMIQSYCPPPTPDIQVLRCGPPSMNKAMAAYMNELGYTANMQFEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	0	1
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	1.4	0.9746
AT2G18196			Heavy metal transport/detoxifi...		Lus10008284 [exp]	2.0	0.9730
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	2.4	0.9686
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	4.0	0.9597
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10037225 [exp]	5.5	0.9584
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Lus10010735 [exp]	5.9	0.9533
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	6.2	0.9432
					Lus10038232 [exp]	6.5	0.9549
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10010279 [exp]	6.6	0.9475
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040735 [exp]	6.8	0.9380

Compare expression of checked genes

Lus10033405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.