Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04930 1637 / 0 ALA1 aminophospholipid ATPase 1 (.1) AT1G26130 681 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G13900 679 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 674 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 670 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 670 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT3G27870 669 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 668 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 667 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 652 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034872 [exp] 2245 / 0 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008945 [exp] 1936 / 0 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028875 [exp] 1932 / 0 AT5G04930 1694 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028873 [exp] 1893 / 0 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008947 [exp] 1882 / 0 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1) Lus10006881 [exp] 678 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 677 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 676 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10037622 [exp] 669 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G246200 [exp] 1807 / 0 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014600 [exp] 1794 / 0 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 1748 / 0 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.006G109200 [exp] 1295 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.016G138000 [exp] 890 / 0 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.003G043300 [exp] 668 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 666 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 664 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 660 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.012G058000 [exp] 654 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10033406 pacid=23172182 polypeptide=Lus10033406 locus=Lus10033406.g ID=Lus10033406.BGIv1.0 annot-version=v1.0 ATGGATTCATCTTCTTCGATCCAGTTTGACAGTTCCTTAAGCAATGAAATCAATTTGGGTTCAAACTCCAGGAGAAGTGCTTCTTCCCACCGTTCCCGGA ATTCCAGAGCCGGTTCAACGAGGGAAGTTGGTTTCAGTGATGTATCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTACTAAGCCTGTCATGTATGGTGG ATCCAGGAGGGCGGATTCGGAAGCCTACAGTATGTCCCAAAAGGAGATCAACGAAGATGATGCGAGGTTTGTTTACATTGACGATCCTGGAAGGACCAAT GAGAATCTCGAGTTTGCTAGCAACTCCATTAGGACTGCTAAATACTCTGCTATTTCCTTCTTGCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCAT ACATTTACTTCCTAATTATAGCCATCCTCAATCAGTTGCCTCAGCTAGCTGTTTTCGGCCGAGGAGCTTCCATTTTGCCACTTGCCTTTGTTCTCCTTGT CACTGCTATTAAGGATGCCTATGAGGATTGGAGAAGGCATAGGGCTGATAAGATAGAGAACAATCGGTTGGCTTGGGTCATGCTTGATGGTCGCTTCCAA CAAAAGAGATTTAAGGATATTCAGGTTGGTGAAGTCATCAAGGTGGAAGCAAACGGTACTCTTCCTTGTGATATGGTCTTGCTCTCTACCAGTGACCCTA CTGGGGTTGCTTATGTGCAGACTATTAACTTGGATGGCGAGTCGAATTTGAAGACTCGGTATGCCAAGCAGGAGACGCTTTTGAAGAATCCCGAGAATTT GGTCATGTTTAATGGGCTGATCAAGTGTGAGAAGCCTAATAGGAACATATATGGGTTCCATGGAAACATGGAGATTGATGGGAAACGCCTCTCACTTGGA CCTTCAAATATTATTCTTCGAGGTTGTGATCTTAAGAATACTGCTTGGGTTCTTGGGGTTGCAGTGTATTGTGGACCTGAGACCAAAGCTATGTTGAATA ACTCAGGAGCCCCTTCCAAGAGAAGCCGGCTTGAGACACGAATGAACTTTGAGATCATCATGCTCTCTGTGTTTCTTGTTGCCTTGTGTACCGTTGTATC AGTATGTGCTGCTGTATGGTTGAGACGCCACAACGATGAGTTAGATACTATGCCCTTTTATAGGCGAAAGGATTACAGTGAAGCCGAGCCTGATAACTAT AACTACTATGGATGGGGAATGGAAATATTGTTCACATTTCTGATGGCAGTAATTGTGTTCCAGATCATGATTCCTATTTCTTTGTACATCTCTATGGAAC TTGTTCGGGTTGGTCAGGCTTATTTCATGATTCGAGATACGTACATGTATGACGAGGCATCAAATACAAGGTTTCAGTGTCGGGCTTTGAATATAAACGA AGATTTAGGGCAGATAAAGTATGTGTTCTCCGATAAAACTGGGACACTTACAGAGAACAAGATGGAATTCCAATGTGCAAGCATATGGGGTGTAGACTAC AGTGGTGAGAAGGCCATCACTGCAGATGAGCAAGGAGGATACTCTGTTAAAGTGGATGGGGCGACTGTGCGTCCAAAGATGAAGGTGAAGGTTGATCCTC AGCTTCTGCAAGTGTTAAGAAGTCGAAACAGGACTGATGAATTTGAACACATCCGTGATTTCTTCCTTGCATTAGCCGCTTGTAATACGATTGTGCCTCT CATCGTTGACACATCTGATCCTGTTTCCAAGTTGATGGATTATCAAGGGGAATCTCCCGATGAGCAAGCATTGGCTTATGCTGCTGCTGCATATGGATTT ATGCTTATAGAGAGAACTTCGGGCCACATAGTTATTGATGTTCTTGGTGAAAGGCAAAGGTTCAATGTCTTGGGTTTGCATGAGTTTGACAGTGAGAGGA AGAGGATGTCTGTGATATTAGGATACCCTGACAAGTCAGTCAAAATCTTCGTAAAGGGTGCTGATACATCCATGTTCACTGTCATTGATCGATCTTCAAG CATGGGCATAGTACGTGCGACTGAAGGCCATCTTCATTCTTACTCCTCCATTGGGCTCAGAACATTGGTTATTGGGATGCGTGAATTGAGTGACTCGGAA TTCGAGAATTGGCATTCTTCGTTTGAAGCTGCTAGTACCGCTTTGATGGGCAGGGCTGCTTTGCTTCGGAAGGTTGCCAGTAATGTCGAAAACCATCTTA CCTTACTTGGTGCCTCCGCTATTGAAGATAAACTTCAACAGGGTGTCCCTGAAGCCATCGAGTCACTGAGGATAGCAGGAATTAAAGTATGGGTTTTAAC TGGGGATAAACAAGAAACTGCCATATCAATTGGCTATTCCTCAAAGCTCCTAACTAACAAAATGACACAGATCATTATAAACAGCAACTCCAAAGAGTCG TGCCGGAAGAGTTTGCAGGATGCTTTGCTTGTGTGTAAGAAGCTTAGCAATGTGTCTACCAGGACATCTAACGATGAAGAAGCTTCTGCATCTTCTGAAA CCTTAGTTGCTTTGATCATTGATGGGACCAGCCTTGTCTATATCCTTGATAGCGAACTTGAAGAAGAGCTCTTTGAATTATCAAGCAAATGTTCCGTGGT CCTTTGTTGTCGTGTGGCACCGCTTCAAAAAGCTGGAATTGTCGCCCTTGTGAAGAACAGGACTTCTGACATGACACTATCTATTGGTGACGGTGCAAAT GATGTTTCAATGATCCAAATGGCTGATGTTGGAGTTGGAATCAGTGGGCAAGAGGGTCGGCAAGCTGTTATGTCATCTGATTTTGCCATGGGGCAATTCA GGTTCTTAGTTCCTCTTCTGCTGGTCCATGGACACTGGAATTACCAAAGAATGGGATACATGATAATTTACAACTTCTACAGGAATGCTGTGTTTGTTCT TGTCTTGTTTTGGTATGTGCTCTTCACCGCTTTCACTTTGACAACTGCCATTAACGAATGGAACAGTGTGTTATATTCTGTAATCTACACAGCAGTGCCA ACTGTTATAGTCGGTGTTCTTGACAAGGACTTAAGCAGGAAGACTTTGGTTAAATATCCTCAGCTTTACGGAGCAGGGCACAGACGAGAAGGTTATAATT CAAAGCTGTTCTGGCTGACGATAATGGACACTTTGTGGCAAAGTGTGGTTGTCTTCTTTGGCCCTTTCTTTGTCTACCAGAATAGCGAAATCGACGCAGC AAGTATAGGGGACCTGTGGACTCTAGCAGTTGTTATTTTGGTTAATTTGCACCTGGCAATGGACATCACACGGTGGAATTGGCTAATGCATGCAGCCATA TGGGGATCCATTGTGGCAACTTTCATCACTGTAATGATCATTGATGCCATACCAAGTTTAGTTGGTTACTGGGCCTTTTTCCATATCGCGAAAGCCGGAT CATTCTGGCTTTGCTTGCTCGGCATAGTTGTAACTGCACTAGTTCCACGGTTCTTTGTAAAACTACTGTATCAATACTGCACACCTTGTGACATCCAAAT TGCGAAGGAGGCGGAGAAGTTCAAACCTTTAAGAAGGGATTTTGGATCTACAGAAGTAGAAATGAGTGCCATTTTGGGTTCTCCAAGGAGATGA
AA sequence Show only first row Show all	>Lus10033406 pacid=23172182 polypeptide=Lus10033406 locus=Lus10033406.g ID=Lus10033406.BGIv1.0 annot-version=v1.0 MDSSSSIQFDSSLSNEINLGSNSRRSASSHRSRNSRAGSTREVGFSDVSGGGGGGGGGATKPVMYGGSRRADSEAYSMSQKEINEDDARFVYIDDPGRTN ENLEFASNSIRTAKYSAISFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGASILPLAFVLLVTAIKDAYEDWRRHRADKIENNRLAWVMLDGRFQ QKRFKDIQVGEVIKVEANGTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLLKNPENLVMFNGLIKCEKPNRNIYGFHGNMEIDGKRLSLG PSNIILRGCDLKNTAWVLGVAVYCGPETKAMLNNSGAPSKRSRLETRMNFEIIMLSVFLVALCTVVSVCAAVWLRRHNDELDTMPFYRRKDYSEAEPDNY NYYGWGMEILFTFLMAVIVFQIMIPISLYISMELVRVGQAYFMIRDTYMYDEASNTRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDY SGEKAITADEQGGYSVKVDGATVRPKMKVKVDPQLLQVLRSRNRTDEFEHIRDFFLALAACNTIVPLIVDTSDPVSKLMDYQGESPDEQALAYAAAAYGF MLIERTSGHIVIDVLGERQRFNVLGLHEFDSERKRMSVILGYPDKSVKIFVKGADTSMFTVIDRSSSMGIVRATEGHLHSYSSIGLRTLVIGMRELSDSE FENWHSSFEAASTALMGRAALLRKVASNVENHLTLLGASAIEDKLQQGVPEAIESLRIAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKES CRKSLQDALLVCKKLSNVSTRTSNDEEASASSETLVALIIDGTSLVYILDSELEEELFELSSKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLSIGDGAN DVSMIQMADVGVGISGQEGRQAVMSSDFAMGQFRFLVPLLLVHGHWNYQRMGYMIIYNFYRNAVFVLVLFWYVLFTAFTLTTAINEWNSVLYSVIYTAVP TVIVGVLDKDLSRKTLVKYPQLYGAGHRREGYNSKLFWLTIMDTLWQSVVVFFGPFFVYQNSEIDAASIGDLWTLAVVILVNLHLAMDITRWNWLMHAAI WGSIVATFITVMIIDAIPSLVGYWAFFHIAKAGSFWLCLLGIVVTALVPRFFVKLLYQYCTPCDIQIAKEAEKFKPLRRDFGSTEVEMSAILGSPRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10033406 [exp]	0	1
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	8.6	0.9517
AT3G47570			Leucine-rich repeat protein ki...		Lus10019525 [exp]	11.6	0.9446
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	15.3	0.9482
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	16.2	0.9420
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10023607 [exp]	20.2	0.9117
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	20.4	0.9478
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10013594 [exp]	21.8	0.9459
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041684 [exp]	24.4	0.9425
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	26.0	0.9338
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	28.1	0.9410

Compare expression of checked genes

Lus10033406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.