Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03770 582 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G14210 362 / 1e-113 Leucine-rich repeat protein kinase family protein (.1) AT1G14390 318 / 2e-97 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 297 / 2e-89 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 262 / 7e-77 Leucine-rich repeat protein kinase family protein (.1) AT5G28680 195 / 6e-52 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 191 / 8e-51 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT4G39110 191 / 1e-50 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 189 / 5e-50 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 188 / 8e-50 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034873 [exp] 1317 / 0 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10005689 [exp] 542 / 0 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10020303 [exp] 519 / 1e-173 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035225 [exp] 400 / 8e-128 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032058 [exp] 397 / 7e-127 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032059 [exp] 390 / 4e-124 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 365 / 2e-114 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013262 [exp] 315 / 3e-96 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030785 [exp] 306 / 6e-93 AT1G14390 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014300 [exp] 728 / 0 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G039000 [exp] 640 / 0 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 600 / 0 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G333300 [exp] 410 / 4e-132 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G147700 [exp] 370 / 6e-117 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 358 / 4e-112 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 356 / 2e-111 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G164700 [exp] 196 / 3e-52 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.009G120400 [exp] 195 / 5e-52 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.001G405500 [exp] 189 / 3e-50 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10033407 pacid=23172146 polypeptide=Lus10033407 locus=Lus10033407.g ID=Lus10033407.BGIv1.0 annot-version=v1.0 ATGGGTGGTGCACTTGTTAAACCATTCCAATATTCCATCTTCTTGTTGTTACTAATGTTTTCTTCTCTATCTCATCCATCACTCCAGCAGCAACAGCAGC AGCTTACAATCCAGCAGCTTCTCATCTACCCTGAGACCCTAACCACCGGCGATGTCTGCACCAACAACAATGACTCTACTACCCTTGAGTGCTATCAAGG CAATATAACTCAGCTCCACTTCATTGGCACCATTGATGATGGTTCCCCTTCTCCATTCTTGCTCCCTCAAGATTTCTCTACTTCCTCTTTCTTTGATTCT CTTGCTGCCATCCCAACCTTGAAGGTCTTGTCTATGGTCTCTCTTGGCCTTTGGGGTCCTCTACCTCCAACTATTGGCCAACTCTCTTCACTTGAGATTC TCAACCTCAGCTCCAACTCTTTATCTGGTGTGCTCCCCATGGAATTCTCATCTCTTAAGAATCTCCAGACACTCATTCTTGACCACAACCAATTCACCGG TGTCGTTCCTCATTGGCTCACTTCACTCTCTGCTCTGGCTGTTTTGAGTCTCAAGAACAACTCTTTTGAAGGTTTCCTTCCCAACGCTATTTCAATGCTG GAGAACGTTAGGATTCTTTCTGTCGCTAACAACCACTTGTCTGGAGAAGTTCCTAATCTTCATAATTTGACAAACCTTCAAGTTCTGGACTTGGGAGACA ACCACCTTGGACCTCAGTTCCCCAACATTTCCAACAGGTTGGTGAGCCTTGTCTTGAGAAACAACAGCTTTAAGTTTGGGATTCCTTCTGAAAAATTGGC TTCAGCCCGCCAGCTTCAGAAGCTGGACATTTCCTTGAATGGGTTTGAAGGACCAATTTCAGCACCATTGTTGCTGTCACTGCCTTCAATCAGTTACCTG GATGTCTCCAGGAACAAATTCACAGGGATGCTCACTGAGAATATGTCATGCAATGGACAACTTAGTTATGTGGACCTGTCGTCCAACCGTTTGAGTGGAG AAATCCCCACTTGTTTGGAATCTACCAGGGTTGTACTGTATGCAAACAACTGCCTGTCAACCAAAAACCAGAACCAAAATCCTTCATATACTTGCCACAC TGAAGCTCTTGCAGTGAGAGTCTTCCCCAGGGATGATGAGGTGAAGCATACCAAAGTTAATAGCAAGGTGGTAGTAGTTGCATCAGGCGCCATGGGAGGG ACTATTGGAGGGATTGCGCTTATCGGCCTGGCCTTCCTGTTTGTGAGGAAAGCTTATCATAAGAATGCTGAAAAATCAACTCCAACAAGGCTCATCACGG AGAATGTATCAAGAATAAACACAGTAAAGCTTCTTTCTGATGCAAGGTACATATCAGAAACAATGAAGCTGGGAGCAGGTCTTCCCGCCTATCGAACCTT TGCTTTGGAGGAGCTTAAGGAAGCTACCAACAATTTTAATGCCTCAAATTTACTAAGTGAAGACACACACAACCAGGTCTACAGAGGAAAGCACACTGAT GGAACAAACATAGCTATCAAGAGCTTAACACTGAGGAAGAAACAAAATCAGCAGACGTTTACACACCAGATTGAGTTGGCCTCGAAGCTTAGACACAGCC ATTTGGTTAGTGTTCTTGGTCACTGCTCGGACTGCTGCCTGGAAAATTCGTCAAACATTAGCAAGATGTTTCTTATATTTGAGTTTTTTCCTAATGGGAC ACTAAGAGACCACATCTCTGGATCTTCAGCGAAGAAGCTGAATTGGATGCAACGGATAGGGGCAGCCATTGGAGTTGCTAAAGGAATTCAATTCCTGCAC ACCGGAATCGTTCCTGGAATGTTTTCAATCAATCTAAAGATTACAGATGTTCTGGTGGACCATGATTATCATGTCAAGATCAGTAACTTCAACCTCCCTC CTTTTGATGGGAATAAAGCAAGTGTGGGCGCTGCAGCTTTTCCTCCAGGACAAAAGCAGAGTTTCCAGGCCAGGCAGCAGCCTGAAGATGATAAAGATGT GGAAGACCTTGGAGTAATCTTGCTTGAAATAATAGTTGGAAGACCGATCTTGTACAGGAATGAAGTCACAGTCTTAAAAGACCTGGTAAGCGCAGCTGCT GATGACGCATCTCGAAGGAGTATAGTTGATCCTAATGTTCAGAAGGAATGTTCAAGTGAGTCGCTGAAAACAATGGTAGATACATGCACAAGATGTCTCA CCAATGATCCATCGACGAGGCCATCCATTGGAGATGTACTCTGGAACTTGCAGTTTGCAGCACAAGTTCAAGAATCATGGAAGGGTGACTGCTGCCTTCA AATTCAAGAAGATTCAACTGCTTCTACATCTTCCCAAACTTAA
AA sequence Show only first row Show all	>Lus10033407 pacid=23172146 polypeptide=Lus10033407 locus=Lus10033407.g ID=Lus10033407.BGIv1.0 annot-version=v1.0 MGGALVKPFQYSIFLLLLMFSSLSHPSLQQQQQQLTIQQLLIYPETLTTGDVCTNNNDSTTLECYQGNITQLHFIGTIDDGSPSPFLLPQDFSTSSFFDS LAAIPTLKVLSMVSLGLWGPLPPTIGQLSSLEILNLSSNSLSGVLPMEFSSLKNLQTLILDHNQFTGVVPHWLTSLSALAVLSLKNNSFEGFLPNAISML ENVRILSVANNHLSGEVPNLHNLTNLQVLDLGDNHLGPQFPNISNRLVSLVLRNNSFKFGIPSEKLASARQLQKLDISLNGFEGPISAPLLLSLPSISYL DVSRNKFTGMLTENMSCNGQLSYVDLSSNRLSGEIPTCLESTRVVLYANNCLSTKNQNQNPSYTCHTEALAVRVFPRDDEVKHTKVNSKVVVVASGAMGG TIGGIALIGLAFLFVRKAYHKNAEKSTPTRLITENVSRINTVKLLSDARYISETMKLGAGLPAYRTFALEELKEATNNFNASNLLSEDTHNQVYRGKHTD GTNIAIKSLTLRKKQNQQTFTHQIELASKLRHSHLVSVLGHCSDCCLENSSNISKMFLIFEFFPNGTLRDHISGSSAKKLNWMQRIGAAIGVAKGIQFLH TGIVPGMFSINLKITDVLVDHDYHVKISNFNLPPFDGNKASVGAAAFPPGQKQSFQARQQPEDDKDVEDLGVILLEIIVGRPILYRNEVTVLKDLVSAAA DDASRRSIVDPNVQKECSSESLKTMVDTCTRCLTNDPSTRPSIGDVLWNLQFAAQVQESWKGDCCLQIQEDSTASTSSQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	0	1
AT1G09130			ATP-dependent caseinolytic (Cl...		Lus10020649 [exp]	3.0	0.8695
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10034490 [exp]	3.7	0.8564
AT3G03770			Leucine-rich repeat protein ki...		Lus10034873 [exp]	6.3	0.8533
AT5G19730			Pectin lyase-like superfamily ...		Lus10043035 [exp]	9.5	0.8397
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10037398 [exp]	10.8	0.8434
AT3G05470			Actin-binding FH2 (formin homo...		Lus10029897 [exp]	12.8	0.8616
AT2G45260			Plant protein of unknown funct...		Lus10009923 [exp]	15.8	0.8637
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10037391 [exp]	18.2	0.7765
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	18.7	0.8602
AT3G53140			O-methyltransferase family pro...		Lus10014400 [exp]	22.0	0.7730

Compare expression of checked genes

Lus10033407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.