Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034875 [exp] 380 / 6e-133 AT3G10680 50 / 2e-06 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G191000 [exp] 39 / 0.0009 AT2G27140 81 / 2e-19 HSP20-like chaperones superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033409 pacid=23172058 polypeptide=Lus10033409 locus=Lus10033409.g ID=Lus10033409.BGIv1.0 annot-version=v1.0 ATGGCTATGAACCAAAGATCAGGTATCGGTGGTCGAGGGGGATTTACCAATTACAGGCGCCCGCAACGCCAGCTTCCTCAGCCTCGCCCATTCCGCCCTC CTCCTCCTCCTCCTCCCTCTGTCAAAACGTTTGAACCCAGGCGGGAAACTGAGGAGCCCAATCACCACTCATTCTTCCTTTTACGCCTTCATCTTCCCGG TTTTACAAAGCTGGAAGAAGTGAAGATCTCAAAGGCAACGGACACGGAGTCGGAGCACATCGTCCGGATTCAAGGTGACCGACTCGACCCGCAAGCCAAC TGCTATTTCCGCTTTCACACCAACATTTCCATCCCGCCGGAATTCGACATCTCACCGCCGATTGACGCCAAGCTCGACGCCGGTGTTCTCACCCTCACTT TCCCCAAATTCTCTTCCTCTTCATGCTCCGAATCTGAATCCGAATTCTCCTCCTCCACGGACGACGACGACAAATCGCCAGAATCCGGCATGGTCAATCC CAATCCCAATCAGGCTGCAGGTCCAATACACAAGGATCTAGGAAACGCCAGTGAGATTAAGGTCGCGGCGGCAGCGGTGCCCACAAAAGAAAAGATTAGG GAGGCTGAGCACAAGAAACCGGAGGTTAAATCTGGCGGAGGAGGTGGAGATCAAATTGGTAAAGAAGCGGTGCCGTTGATAGTGAGAGGGAAGGATGTTG ATTTAGGTAGGAAGAATGCTTGGGAAGAAGGGAAAGGGAGAGAGGGAGTGCTGAAGAATGGGAAGGAGATAGGCACACCAGTCATGGCGGCGACGGCTGT GGGGAAGAGTGAGTTGGTGGTGAATATGGGGGCGGCGGTTGCAGTCATCGCTGCGCTTGGAACATATACTTACTATTTCATGTTTGGTTAA
AA sequence Show only first row Show all	>Lus10033409 pacid=23172058 polypeptide=Lus10033409 locus=Lus10033409.g ID=Lus10033409.BGIv1.0 annot-version=v1.0 MAMNQRSGIGGRGGFTNYRRPQRQLPQPRPFRPPPPPPPSVKTFEPRRETEEPNHHSFFLLRLHLPGFTKLEEVKISKATDTESEHIVRIQGDRLDPQAN CYFRFHTNISIPPEFDISPPIDAKLDAGVLTLTFPKFSSSSCSESESEFSSSTDDDDKSPESGMVNPNPNQAAGPIHKDLGNASEIKVAAAAVPTKEKIR EAEHKKPEVKSGGGGGDQIGKEAVPLIVRGKDVDLGRKNAWEEGKGREGVLKNGKEIGTPVMAATAVGKSELVVNMGAAVAVIAALGTYTYYFMFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10680			HSP20-like chaperones superfam...		Lus10033409 [exp]	0	1
AT3G10680			HSP20-like chaperones superfam...		Lus10034875 [exp]	3.6	0.8641
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Lus10025874 [exp]	5.1	0.9149
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	8.9	0.9091
AT2G35200			unknown protein		Lus10036051 [exp]	15.5	0.8284
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042712 [exp]	16.1	0.8713
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	17.1	0.8758
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029673 [exp]	18.4	0.8542
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	18.5	0.8738
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	22.9	0.8713
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042241 [exp]	25.8	0.8080

Compare expression of checked genes

Lus10033409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.