Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48050 722 / 0 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 706 / 0 BAH domain ;TFIIS helical bundle-like domain (.1) AT4G11560 96 / 6e-20 bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G24200 64 / 8e-10 Transcription elongation factor (TFIIS) family protein (.1) AT2G25120 61 / 3e-09 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G23120 55 / 3e-07 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G43990 54 / 7e-07 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G22140 49 / 1e-05 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT5G09850 46 / 0.0001 Transcription elongation factor (TFIIS) family protein (.1) AT3G10820 45 / 0.0004 Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042137 [exp] 1281 / 0 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10008492 [exp] 89 / 2e-17 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 89 / 2e-17 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10009128 [exp] 79 / 3e-14 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10028515 [exp] 79 / 3e-14 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10033586 [exp] 77 / 9e-14 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10017630 [exp] 77 / 1e-13 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10020020 [exp] 56 / 8e-08 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 54 / 2e-07 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G077500 [exp] 1488 / 0 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072800 [exp] 1485 / 0 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072900 [exp] 1441 / 0 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077700 [exp] 1427 / 0 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.001G104300 [exp] 96 / 7e-20 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.003G127400 [exp] 90 / 5e-18 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.002G020000 [exp] 71 / 9e-12 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.005G241400 [exp] 65 / 5e-10 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Potri.003G127300 [exp] 60 / 1e-09 AT4G11560 207 / 3e-64 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.011G010901 [exp] 52 / 1e-06 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain PF08711 [flax] [poplar] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Lus10033410 pacid=23172248 polypeptide=Lus10033410 locus=Lus10033410.g ID=Lus10033410.BGIv1.0 annot-version=v1.0 ATGCATGGACGGGGAGGTGAGGAGAGGAAGAGGGCTCTGCAGCACATGTGGACAGATCCTACCCCTACCATTTCTGCTGTAGCTGCTGATGTTTCTTTGT TGTCGTCTCCTCTTCCTAATTCGTTTTACAAGGACAGGCGCAAAATCTGTATTGGTGACTGTGCTCTTTTCAAGCCGTCAGAGGAGTCACCACCTTTCGT TGGAATAATCCGCTGTGTCACTACGAGTAATGACAATAACTTAACTTTAGGCGTCAATTGGTTTTATCGACCAGCCGAAATAACGCTTGGCAAAGGCATC CTGTTGGAAGCTGCGCCAAACGAAATATTTTATTCCTTCCACGAGGATGAGACATCTGCCGCATCATTACTCCATCTGTGTAAAGTTTCCTTCCTTCCTA AAGGCGTTGAGCTTCCGTCAGGGATTTCTTCATTTGTGTGCCGCCGTGTTTATGACATTACAGACAACTGTTTATGGTGGTTAACTGATCAAGATTATAC TGATGTGAGTTATAGAATATTTTCTTGCAGATGGTGGTTAACTGATCAAGATTATACTGATGAACATCAAGAAGAAGTAAATCGTTTATTGTCTAAGACA CACATAGAAATGCATGGCACAGTGCAGTCTGGAGGACATTCACCAAAGCCAGTGAATGGTCCAACTGCAACATCACAGTCAAAACCTGGTTCAGATAGCG TGCAGAATAGTGGTTCATCCTTTCCTTCTCAAGTTAAGGGAAAGAAAAGGGAGCGGGGAGAGCGTGGAGATCCAGGGTTAGAGCCTATTAAACGAGAACG TTCTGTAAAATTAGATGATGTGGATTCTGCTAACTCAAGAGTAGAGGGTACCTGGAAATCAGAAGTGGTAAAACTGAAAGAGAAAGGGGGTCTTGTAGAT TTTAGTGCTGTTGAGAAATTGGTGCAATTCATGTTATATGATAGAAATGAAAAGAACACAGATTTGGTTGGCCGGTCTATTATGGCTGGTGTTGTAGCTG CCACAGATAAGTTTGATTGCCTTGATAGGTTTGTGCAACTTAGAGGCTTACCTGTATTTGATGAATGGATACACGAGGTGCATAAAGGCAGAACTGGTGA TGGTAATGGATTCAAGGACAGTGACAAACCAGCCGAAGAGTTTCTCTTAGTTATACTTCGTGCTCTTGATAAACTCCCTGTTGATTTGCATGCTTTACAA ACTTGTAATATTGGGAAATCTGTCAACCATCTACGTACGCACAGGAATTTGGAAATTCAGAAGAAGGCAAAAGGTTTAGTTGACACTTGGAAAAGACGTG TTGAGGCTGAGATGGATGCAAAGTCTGGGTCAAACCAAGGTGTCTCCTGGGCTACAAGATCACGTATCCCTGATGCTTCCCATGTTGGGAGCAGACACAC AGGTATAGCCACCGAGGTCACGCTGAAGAGCTGTACAAACCATCTTTCCGCTGTGAAACCTGCTCCAGTTAAGCTTGTCCATGGAGAGACTATGACTAAG TCAGCGTCTGGATCCCCAGGGTCCAATAAATCAACGCTAGTGCCAGTGCCAGTGCCTGGTGGTACAGCTGTTAAAGAAGGGCAGGCTCGTTATGTTGTTG GTGCTAGCGGTTCTATTGCTTCTCCAACAATGGTTAGGGATGAGAAGAGTAGCAGTTCTAGCCAGTCACACAGTAATAGTCAGGCTGTTTCTGGTGACCA AAACAGAACTGTTGGATTTTCTGGAAAGGAGGACACAAGGAGCTCTGGTTCTGTGAGACCAAACAGGGCTGCTAAAAGTTCTTCACGGCATCGTAACTCG AGCAATGGCTTTCTGGGCCAAGGTGGATCAGCTGTTCAACGAGAGACAGGTTCAAGCAGAAGTTCACCAATGCAAAGAAATCCTGGAGCTGAAAAGTTGT CACAAATTAGTTATTGTGAAAAGGTGGTTGATTTTCCAACAGTCAACAGTCAGAAGTTGGTTGTTAAGATTCCTAACCGAGGCCATAGTCCTTCCCAGAG TGCTTGTGAAGGATCATTTGACGGTCCTTCTTCTGTACACAATAGATCCTGTTCTCCTTTACCTTCTGAGAAACAGGATCAACTTGATCGCAATTTGAAG AATGTCGTCTGCCATGCTAATATTGTCTCGGATGTTAAAACCGAGTCATGGCAGAGCAATGATTTCAAAGACGTGCTGAATGGATCAGATGAAGGTGATG GCTCCCCTGTAACCGGTCTGGACGATGCACACAGTAGAGCGGGTGAAGATACCAAGAATTTAGCAGAAGTCCCAAAATCCACTTCATTGCCTTCCAGCAG TGAAAAAAAGTTGGGAAAATTACCTGATGCTTCATTTAGCTCAATAAATGCTCTGATAGAAAGTTGTGCAAAGTGCTCTGATGGCAATGCATCAACATCA ACGGCAGATGATGTAGGGATGAACCTGCTAGCTACTGTTGCTACTGGAGATATATCTACGCCTGATCTGGTTTCTCCAGCTTCTCTGAAAATGAGAACCC CTGTTTGCAAGCAGTGTAATGCACATATCGGCTCGAGGTTGCTGGCAATTCCAGGAGATAATGTGGCTCACGAGTGTGGTCAGTCAGCTCAGAACATTGC TGGTGAACCTGACAACAATGGTGGTCATGTCGGTAAGCTAGATGTTGAGGCAGATGGTTCCTCTCAAGATAAAGTTCCGGCGGAGCACAGTCACGGTCCA AATTCTTCTTTGCTAGAGACAGAACAATCTAAAGAGCAGGGCAAGATAAAGGAAGATAAAACACTTGGAATACCTAGTGGAAGTTTTGTTGGTCTTCCTG TTGTCGATGGTCTAGAAAAGAAATCCGGCAATGTAGGCAATTATCCATGGAAGGTAGAAGCCAGTAATACACTTACTGTAGAAGCCATCTCTGACGCTAA AGAAAAACCAGTAACCTTCTTTTCAATAGGACATAAGGACAATGTTGGTGGTGTTGAAGTTGGGGCTGGTGGAGTTCAAGGTTTTTCCCCACATTCAGCT TCCTATGTAGAAGTGGAAAACAAGAAAATGAGTGACAAAGATCTCAACCCCGTTTCATCCGCAGATCAAAAGCCCCCTGCAGTATTGCATTCTAATAAAG GTAAAACTGCTACGCAGATGCTAAATCCTTCTGATGCTGGACAGGAAATGGTATCCAAATGTCATAAGGAAGTTCAAAATGAAGAGGCTGATGGAACTAT TGGCAGGAACCCCCAGCCTGAAAATCCAAAAACTGATCAGCTTAGTAATTCTTCTAGCACCGATACAAGTCAGAAGGCTGAGCATGAGGAGCAAATTCTG TGTACTGGGGCTAATGAGCAGAAAAGTGCTTCTCATGATGAATCACGTATGCAATTGGACCAGAGAGTCGGATGTAGAGGATCCCATGTAAAAAGGGACG AAACAGACCAAATGGAGGAAACTTGTCCGGCTATAGGAGATGCTTCTGTCGCTGTAAGTGGAAGCCAAGTTAATGGAGTGAAAGCAGTATTTGATCTGAA TGAGGGACTTAATGGGGACGACGGGAAGTACACAGAACCACGCAATGTAAAATTCCCCAGCTCTGGCTCTATTCAATTGATTAATCCGTTGCCTTTGCAA GCTTCTTCTCTCTCCAGTAGCCTCCCTGCTTTAATAACTGTGGCTGCTGCTGCTAAGGGTCCTTTTGTTCCACCAGAGGATTTATTAAAGAATAAAGGGG AAATTGGTTGGAGAGGATCAGCCGCAACAAGTGCATTTAGACCAGCTGAACCTAGAAAAGCTGTTGATGTCAATGCAATAGCAACTAGTAGCCCTTTTCC CATTCCTTCTTCTAAGCCTACTCGCCCCTTCTTGGATTTTGACTTAAATGTGGCTGATGAAAGGGTCCTTGAAGATTTGGCTTCTCGAGGTTCTGATCAG GATATGACTTGTGTGCCTGACATTGCAGATAGGGAAAATGATGAAGTTCGCAGTTGTGGGGGACTTGACCTTGATTTGAATAAAATGGATGATGATGCTG ATATTGGCAATCACTTGACTATGAATGGTCAACACTTGGATTCCAAGTTCGAGTCAGTCAAACCATCATCAGCAGGACTTCTCAATAATGTAGGCGTTCG TTGTGATTTTGACTTGAATAATGGGCCTCTTGCTGAGGAAGTGAGTGTTGAGGCATCTTCATTTGTCCAACAGTCGAGGAATATCATTGTATCTCAGACA TCTGTTCCTGCCTTTCGGGTCAGTAATAAGGATCTTGGGAATTTCTCTTCTTGGCTTCCTCAAGGGAACTTTCCAGGTGTTGCATTTCAGTCAGTCTTGC CTGTTAGAGGTGAACATCCGTTCTCATTAGTTGCACCTGGCGCATCTCAGAGAATGATAGCTCCTGCTAGTGTCAGCAATGCCTTTAGTCCTGATGCCTA CAGAGGACCGGTGTTGTCATCTTCTCCAGCAGCTATACCTTTCCCATCTGCTCCGTTCCAATATCCAGTATTTCCTTTTGGAAACAATTTCCCACTATCA TCGGCAGCATTTTCAGGTGGTTCTACAACATTTGTTGACTCAACATCAGGTGGGAGGCTTTGTTTTCCAGCTATGCAATCGCAGGTCTTGACACCTGCTG GTACGGTTCCATCCTCGTATCCGAGGCCTTATGCTGTCAACGTTCCAGATACGAATAGTATAGGCAGTGAAAGCAGTCGGAAGTGGGGAAGACAGGGACT AGACCTTAATGCTGGGCCTTTGGGTCCGGATAGAGAAGGGAGAGATGAAACTGCATCACTTGCTTCCAGGCAGCTCTCTCTGGCGAATTCTCAAGTATTT GTTGACGAGCAGCAGTCTAGGATGTACCAGGTTTCAGGCGGTGGTGTCCTGAAAAGGAAGGAACCAGATGGAGGAGGGTGGGAAGGCTTCAAGAATTCAT CATGGCAGTAG
AA sequence Show only first row Show all	>Lus10033410 pacid=23172248 polypeptide=Lus10033410 locus=Lus10033410.g ID=Lus10033410.BGIv1.0 annot-version=v1.0 MHGRGGEERKRALQHMWTDPTPTISAVAADVSLLSSPLPNSFYKDRRKICIGDCALFKPSEESPPFVGIIRCVTTSNDNNLTLGVNWFYRPAEITLGKGI LLEAAPNEIFYSFHEDETSAASLLHLCKVSFLPKGVELPSGISSFVCRRVYDITDNCLWWLTDQDYTDVSYRIFSCRWWLTDQDYTDEHQEEVNRLLSKT HIEMHGTVQSGGHSPKPVNGPTATSQSKPGSDSVQNSGSSFPSQVKGKKRERGERGDPGLEPIKRERSVKLDDVDSANSRVEGTWKSEVVKLKEKGGLVD FSAVEKLVQFMLYDRNEKNTDLVGRSIMAGVVAATDKFDCLDRFVQLRGLPVFDEWIHEVHKGRTGDGNGFKDSDKPAEEFLLVILRALDKLPVDLHALQ TCNIGKSVNHLRTHRNLEIQKKAKGLVDTWKRRVEAEMDAKSGSNQGVSWATRSRIPDASHVGSRHTGIATEVTLKSCTNHLSAVKPAPVKLVHGETMTK SASGSPGSNKSTLVPVPVPGGTAVKEGQARYVVGASGSIASPTMVRDEKSSSSSQSHSNSQAVSGDQNRTVGFSGKEDTRSSGSVRPNRAAKSSSRHRNS SNGFLGQGGSAVQRETGSSRSSPMQRNPGAEKLSQISYCEKVVDFPTVNSQKLVVKIPNRGHSPSQSACEGSFDGPSSVHNRSCSPLPSEKQDQLDRNLK NVVCHANIVSDVKTESWQSNDFKDVLNGSDEGDGSPVTGLDDAHSRAGEDTKNLAEVPKSTSLPSSSEKKLGKLPDASFSSINALIESCAKCSDGNASTS TADDVGMNLLATVATGDISTPDLVSPASLKMRTPVCKQCNAHIGSRLLAIPGDNVAHECGQSAQNIAGEPDNNGGHVGKLDVEADGSSQDKVPAEHSHGP NSSLLETEQSKEQGKIKEDKTLGIPSGSFVGLPVVDGLEKKSGNVGNYPWKVEASNTLTVEAISDAKEKPVTFFSIGHKDNVGGVEVGAGGVQGFSPHSA SYVEVENKKMSDKDLNPVSSADQKPPAVLHSNKGKTATQMLNPSDAGQEMVSKCHKEVQNEEADGTIGRNPQPENPKTDQLSNSSSTDTSQKAEHEEQIL CTGANEQKSASHDESRMQLDQRVGCRGSHVKRDETDQMEETCPAIGDASVAVSGSQVNGVKAVFDLNEGLNGDDGKYTEPRNVKFPSSGSIQLINPLPLQ ASSLSSSLPALITVAAAAKGPFVPPEDLLKNKGEIGWRGSAATSAFRPAEPRKAVDVNAIATSSPFPIPSSKPTRPFLDFDLNVADERVLEDLASRGSDQ DMTCVPDIADRENDEVRSCGGLDLDLNKMDDDADIGNHLTMNGQHLDSKFESVKPSSAGLLNNVGVRCDFDLNNGPLAEEVSVEASSFVQQSRNIIVSQT SVPAFRVSNKDLGNFSSWLPQGNFPGVAFQSVLPVRGEHPFSLVAPGASQRMIAPASVSNAFSPDAYRGPVLSSSPAAIPFPSAPFQYPVFPFGNNFPLS SAAFSGGSTTFVDSTSGGRLCFPAMQSQVLTPAGTVPSSYPRPYAVNVPDTNSIGSESSRKWGRQGLDLNAGPLGPDREGRDETASLASRQLSLANSQVF VDEQQSRMYQVSGGGVLKRKEPDGGGWEGFKNSSWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48060			BAH domain ;TFIIS helical bund...		Lus10033410 [exp]	0	1
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10015908 [exp]	1.7	0.9422
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	2.0	0.9345
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10023867 [exp]	4.5	0.9030
					Lus10005528 [exp]	5.3	0.8981
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	6.9	0.9322
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	7.4	0.9145
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032830 [exp]	8.2	0.9177
AT1G28320		DEG15	protease-related (.1)		Lus10015419 [exp]	8.2	0.8456
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	8.5	0.9106
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	10.9	0.9098

Compare expression of checked genes

Lus10033410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.