Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62880 334 / 1e-116 ARAC10, ATRAC10, AtROP11 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) AT3G48040 328 / 1e-114 ROP10, ARAC8, ATROP10, ATRAC8 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) AT1G75840 305 / 1e-105 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT1G20090 304 / 3e-105 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT4G35020 302 / 2e-104 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT3G51300 302 / 3e-104 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT2G17800 301 / 4e-104 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) AT4G35950 300 / 2e-103 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT5G45970 296 / 3e-102 ATRAC2, ATROP7, ARAC2 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) AT4G28950 286 / 8e-98 ATRAC7, ARAC7, ATROP9, ROP9 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034876 [exp] 373 / 5e-132 AT3G48040 356 / 2e-126 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) Lus10033131 [exp] 304 / 6e-105 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034538 [exp] 302 / 3e-104 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014123 [exp] 299 / 9e-103 AT4G35020 354 / 5e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014258 [exp] 299 / 9e-103 AT3G51300 394 / 1e-141 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) Lus10015298 [exp] 296 / 7e-102 AT5G45970 347 / 9e-124 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10019786 [exp] 296 / 7e-102 AT4G35020 355 / 1e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10025959 [exp] 293 / 2e-100 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10039899 [exp] 288 / 7e-99 AT4G35020 324 / 1e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073000 [exp] 339 / 1e-118 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.012G077800 [exp] 338 / 3e-118 AT5G62880 359 / 6e-128 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.005G242000 [exp] 307 / 2e-106 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.009G134600 [exp] 307 / 3e-106 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.002G019500 [exp] 306 / 5e-106 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.004G174900 [exp] 306 / 8e-106 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.005G110700 [exp] 305 / 1e-105 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.007G061500 [exp] 305 / 1e-105 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.013G123800 [exp] 302 / 3e-104 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.019G092300 [exp] 299 / 3e-103 AT1G75840 337 / 9e-120 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10033411 pacid=23172039 polypeptide=Lus10033411 locus=Lus10033411.g ID=Lus10033411.BGIv1.0 annot-version=v1.0 ATGGCGTCGAGTGCCTCCAGGTTCATAAAATGTGTGACAGTGGGAGACGGAGCTGTGGGCAAGACCTGTATGCTTATCTGCTACACCAGTAACAAGTTCC CTACTGGAGTTTCCTTTTCTTGCCATCCACATTGGGAAGTTGCTTTAAGCTTAGGATCTGGTCTTTATGATGCCAACAACAATGAAGTTTACGATTCTTG CCAGGATTACGTACCCACAGTGTTCGACAATTTCAGTGCGAATGTAATAGTTGAAGGAACCACTGTCAACTTAGGCCTCTGGGATACAGCTGGTCAGGAA GATTACAACAGGCTAAGGCCATTGAGCTATAGAGGTGCAGATGTCTTTGTCTTGACTTTCTCATTAGTTAGCCGGGCCAGCTACGAGAATGTACTTAAGA AGTGGATTCCTGAGCTTCAGCATTATGCCCCTGGGATTCCTGTGGTCCTTGTTGGTACCAAGTTAGATCTTCGCAACAACAAGCACTATATGGCTGATCA TCCTGGGCTGGTGCCTGTAACTACTGAACAGGGAGAAGAACTCCGGAAAATCATAGGAGCAACGTACTTCATCGAATGCAGCTCAAAAACTCAGCAGAAT GTGAAGTCAGTTTTCGATGCTGCAATCAAGGTAGTAATCAAGCCAGCAACGAAAGGGAAAGACACAAAGAAAAAGAAGCCTCGTCGAGGATGCCTCTTGT CAGTAATTGTTCATTTATGTCCATATTGTGTGTTGTGTGTACCTGCCAAACTGAAGGCTGTTGCTAAGAAATTGCAGTATGTGGTTATGCAGGAACGTGC TTTGCGGGAGGAAATTGGTTTGCTTAAAATGAAATCGACCATGGCGACAACAAAACTCTGA
AA sequence Show only first row Show all	>Lus10033411 pacid=23172039 polypeptide=Lus10033411 locus=Lus10033411.g ID=Lus10033411.BGIv1.0 annot-version=v1.0 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTGVSFSCHPHWEVALSLGSGLYDANNNEVYDSCQDYVPTVFDNFSANVIVEGTTVNLGLWDTAGQE DYNRLRPLSYRGADVFVLTFSLVSRASYENVLKKWIPELQHYAPGIPVVLVGTKLDLRNNKHYMADHPGLVPVTTEQGEELRKIIGATYFIECSSKTQQN VKSVFDAAIKVVIKPATKGKDTKKKKPRRGCLLSVIVHLCPYCVLCVPAKLKAVAKKLQYVVMQERALREEIGLLKMKSTMATTKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10033411 [exp]	0	1
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10034876 [exp]	1.4	0.8454
AT2G37195			unknown protein		Lus10002229 [exp]	7.1	0.7677
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	9.8	0.7626
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034415 [exp]	12.0	0.7600
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10022735 [exp]	13.6	0.7609
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	14.0	0.7471
AT5G65600			Concanavalin A-like lectin pro...		Lus10027340 [exp]	18.7	0.7155
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	20.2	0.7739
AT1G54730			Major facilitator superfamily ...		Lus10029971 [exp]	21.2	0.7498
AT3G19340			Protein of unknown function (D...		Lus10041512 [exp]	27.4	0.7304

Compare expression of checked genes

Lus10033411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.