Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15540 91 / 6e-21 EamA-like transporter family (.1) AT5G40230 91 / 1e-20 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G40240 88 / 9e-20 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40210 84 / 2e-18 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28050 79 / 1e-16 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28070 76 / 1e-15 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT3G30340 75 / 3e-15 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28100 74 / 7e-15 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28130 70 / 9e-14 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G28080 70 / 1e-13 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034877 [exp] 320 / 3e-109 AT5G40230 207 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 100 / 5e-24 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10039425 [exp] 85 / 2e-18 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 83 / 5e-18 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 82 / 1e-17 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 82 / 1e-17 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039430 [exp] 82 / 1e-17 AT3G28050 315 / 8e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030842 [exp] 81 / 3e-17 AT3G28050 244 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 76 / 2e-15 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073200 [exp] 163 / 5e-48 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G337100 [exp] 94 / 1e-21 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 88 / 1e-19 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G145800 [exp] 87 / 1e-19 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307900 [exp] 77 / 4e-16 AT1G25270 254 / 2e-82 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 77 / 6e-16 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.014G108500 [exp] 75 / 4e-15 AT3G30340 361 / 8e-124 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 74 / 1e-14 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 74 / 1e-14 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 73 / 1e-14 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033412 pacid=23172181 polypeptide=Lus10033412 locus=Lus10033412.g ID=Lus10033412.BGIv1.0 annot-version=v1.0 ATGGGATCCATCCGGTTGAAGGAGTGCATGCCGTTTGTCGGGATGTTGACGGTGGAATGTTTGGACGTTGGGTTAACAACTCTCAGTAAAGCCGCCATGT CGTTGTCTACTCCAACGCCCTCGCAACTCTCATCTTATTCCCTTCTTCCTTCTTCTTCCACAGACGACCCCAGGAGAAAAAGCCCATCACTTTCCCCTTC ATCTGCAACTTCTTCCTTCTGGCTCTATTTGGAATTGTGTTTAGTTGACTATAGTTCTCCAACACTTTCCTCTGCTCTTAGCCAATTGATTCCTGCTTTC ACTTTCCTTTCCGCTCTTCTCTCCAGGATGGAGAAGTTGGATTTGGGAAGCCTAAGGAGCCAAGTGAAAGTAGTGGCCACTTTTGTATGCATTTCTGGAG CTTTAATCGTTATCTTCTATCAAGGCCCTCCCATTTTCTCCCTCCATTCACTCCCCGATCCAACTGCTGTTCCCTCCATAACAGCAGCAAGTTCTTGGCT CGTTGGAGGCCTTCTCCTCGCCATTGCTGGTCTCTCCATGTCAATCTTCAACATTTTGTCAGTTGTGTCGCTGATGGCCGAGAAGTACTCAAATGCATGG AAGCTGCAAGCTGATATCCAGCTTGTGTCAGTGGTCTACTCTGCTATACTTGGGAATGTTGTTACCTTTTGTGTGGTGTCATGGTGCATTCAAGTGAAAG GGCCAGTTTTTGTGGCAATTGTCATTGGAGCAGTGGTGACTGTAACAGGTTTCTATGGAGTAATCGGGGCACAATCAGGCGATAATTGGAGAGCGGAATC ATCTTCTTCAGTGGGGGCTAGTCTACTAGATAACTACGATGATGGTGTGTAG
AA sequence Show only first row Show all	>Lus10033412 pacid=23172181 polypeptide=Lus10033412 locus=Lus10033412.g ID=Lus10033412.BGIv1.0 annot-version=v1.0 MGSIRLKECMPFVGMLTVECLDVGLTTLSKAAMSLSTPTPSQLSSYSLLPSSSTDDPRRKSPSLSPSSATSSFWLYLELCLVDYSSPTLSSALSQLIPAF TFLSALLSRMEKLDLGSLRSQVKVVATFVCISGALIVIFYQGPPIFSLHSLPDPTAVPSITAASSWLVGGLLLAIAGLSMSIFNILSVVSLMAEKYSNAW KLQADIQLVSVVYSAILGNVVTFCVVSWCIQVKGPVFVAIVIGAVVTVTGFYGVIGAQSGDNWRAESSSSVGASLLDNYDDGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10033412 [exp]	0	1
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	4.2	0.9654
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Lus10032509 [exp]	4.5	0.9560
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	8.4	0.9651
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	10.6	0.9496
AT5G41810			unknown protein		Lus10003901 [exp]	12.7	0.9614
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	13.6	0.9600
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	14.1	0.9553
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	14.5	0.9555
AT1G49570			Peroxidase superfamily protein...		Lus10020994 [exp]	15.4	0.9218
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005594 [exp]	17.2	0.9345

Compare expression of checked genes

Lus10033412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.