Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14890 88 / 2e-20 NHL domain-containing protein (.1) AT3G01430 76 / 3e-17 unknown protein AT5G62865 73 / 2e-16 unknown protein AT3G48020 69 / 4e-15 unknown protein AT5G25240 52 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001942 [exp] 87 / 8e-22 AT5G14890 79 / 1e-17 NHL domain-containing protein (.1) Lus10001932 [exp] 86 / 2e-21 AT5G14890 76 / 1e-17 NHL domain-containing protein (.1) Lus10001933 [exp] 86 / 2e-21 AT5G14890 78 / 4e-17 NHL domain-containing protein (.1) Lus10006290 [exp] 62 / 1e-12 AT5G25240 67 / 5e-15 unknown protein Lus10003184 [exp] 56 / 2e-09 AT1G04700 94 / 3e-21 PB1 domain-containing protein tyrosine kinase (.1) Lus10032160 [exp] 43 / 3e-05 AT5G14890 82 / 1e-19 NHL domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073800 [exp] 169 / 6e-54 AT5G62865 87 / 5e-22 unknown protein Potri.012G078300 [exp] 158 / 2e-49 AT5G62865 77 / 6e-18 unknown protein Potri.003G101300 [exp] 89 / 8e-23 AT5G14890 125 / 6e-34 NHL domain-containing protein (.1) Potri.001G132100 [exp] 76 / 2e-17 AT3G01430 122 / 7e-36 unknown protein Potri.006G259300 [exp] 75 / 3e-17 AT5G25240 47 / 2e-07 unknown protein Potri.018G114200 [exp] 61 / 6e-12 AT5G62865 57 / 1e-10 unknown protein Potri.006G190100 [exp] 54 / 9e-10 AT5G25240 64 / 3e-14 unknown protein Potri.003G110200 [exp] 39 / 0.0005 AT4G19980 51 / 5e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033413 pacid=23172155 polypeptide=Lus10033413 locus=Lus10033413.g ID=Lus10033413.BGIv1.0 annot-version=v1.0 ATGGCTACTGCCGAAGCAGATGCAGATCATATGGCACGGCGGCGAGACGCCGTCGCCTCCTACCCAATCCCAGAAGAAACTTCTTCAAACTCACTTTTGG CCGGTTCTCGATGTTGCTTCGCCTTCCCCTGCTGCTTCGGCTCCCGCCGTTCCAGCTACTTCCCTCCCTCTTCCCCTACTACTACTACTTCCCCCCCCTG GTGGGAGAAGCACCGCTGGCTGTCCACTGGAATCCAGGCGATCAAAAAGGTCAGGGAGTGGTCAGAGATCGTGGCCGGTCCCAAGTGGAAGACCTTCATC CGCAGATTCAACAGGAACCGCAGCGGGGGAATTTCGAACAACCACCGCCACGGGAAGTTCCAGTATGATCCCTTGAGTTACGCCTTGAATTTCGACGAAG GGAATCACCCGGATTTCGATGAATTCGAGGAACAAGGCACTGGATTCCGCGACTTCTCATCGAGATACGCCGCGAATTCTGGATCATCTAATCCGCTGCA CATGGACTCTCGCGATGTCAAGGAGTCGGGAGCGATGGTATGA
AA sequence Show only first row Show all	>Lus10033413 pacid=23172155 polypeptide=Lus10033413 locus=Lus10033413.g ID=Lus10033413.BGIv1.0 annot-version=v1.0 MATAEADADHMARRRDAVASYPIPEETSSNSLLAGSRCCFAFPCCFGSRRSSYFPPSSPTTTTSPPWWEKHRWLSTGIQAIKKVREWSEIVAGPKWKTFI RRFNRNRSGGISNNHRHGKFQYDPLSYALNFDEGNHPDFDEFEEQGTGFRDFSSRYAANSGSSNPLHMDSRDVKESGAMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	0	1
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10002705 [exp]	1.7	0.8578
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	2.0	0.8628
AT1G54120			unknown protein		Lus10013152 [exp]	3.2	0.8654
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024448 [exp]	3.5	0.8207
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	4.0	0.8545
AT4G02090			unknown protein		Lus10010014 [exp]	6.7	0.8540
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10022481 [exp]	8.4	0.8243
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	8.5	0.8271
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	10.1	0.8386
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Lus10002263 [exp]	11.7	0.7781

Compare expression of checked genes

Lus10033413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.