Plant FIBer expression Database

Lus10033414 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034878
[exp]
409 / 5e-146 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G078600
[exp]
308 / 6e-106 ND /
PFAM info
Representative CDS sequence
>Lus10033414 pacid=23172040 polypeptide=Lus10033414 locus=Lus10033414.g ID=Lus10033414.BGIv1.0 annot-version=v1.0
ATGCCAGGTCCCGGTGCGCATCTGATGTACGCGATGGGATCGGGAGTTGGCCTAACTAGTTTAACCGGCGGCCGATTCACCCCTCACCATACTCTTATCT
ACACCGTCAACGCCTTCTTGGGTCCCGACATCGGCTCCTTCTCCGACTGGCTTTCTTCCTTCTTCTCCCATTCTTCCTCCTCCTCCCCCCTTTCCCGCCT
CGTCGACTACATTCATCATCCCGTTTACTACATCCTCATCCTCGGCTTCCCCTTATCCCTTTTCTACTCATGGCTTTCCCATCTCTTGCTCCGCCGCAAG
CTCCTTGATTCCATTTCTGGGGTAGCACTTGTAAGGAAGCAATGCTTCTTCTTAATAGCTGCAGGATCTTTGTCACACTTTTTCCTAGACCACTTATTCG
AGGAAAATGGACATTCCACAATGTATACTTGGATACTAAGCACCGGTTGGTGGGAAAATCGTGCCCCAATCAATCCAGATGCTGTTCTGGTTACCGGTTT
TCTCTGCACTTGCTTAATGCTTGGGTTTGTTTATGTCAATAGGTTGAAGTCTAGTACCAAGTCTCTTAGGAAACAGACAAACCAGTCATACCAACTTATT
CTGGGCATAGCCTGCTGTTATTGCCTGTGGTGTGCAAGCCAGATTTACTGGCTAAATCCTCGTCGGCCGGCGGTTGGTGAAGAGGCTGATCTTGGGGTTA
TTGCATTTCTAGCCATCTATTTCTTCCTGCCTCATTTCTTCTGTGCCTTGTCTTTGAACCCCGCAGGTCATCAACCGGAACCAATTCCACTGTAA
AA sequence
>Lus10033414 pacid=23172040 polypeptide=Lus10033414 locus=Lus10033414.g ID=Lus10033414.BGIv1.0 annot-version=v1.0
MPGPGAHLMYAMGSGVGLTSLTGGRFTPHHTLIYTVNAFLGPDIGSFSDWLSSFFSHSSSSSPLSRLVDYIHHPVYYILILGFPLSLFYSWLSHLLLRRK
LLDSISGVALVRKQCFFLIAAGSLSHFFLDHLFEENGHSTMYTWILSTGWWENRAPINPDAVLVTGFLCTCLMLGFVYVNRLKSSTKSLRKQTNQSYQLI
LGIACCYCLWCASQIYWLNPRRPAVGEEADLGVIAFLAIYFFLPHFFCALSLNPAGHQPEPIPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10033414
[exp]
0 1
AT4G15930 Dynein light chain type 1 fami... Lus10006500
[exp]
2.4 0.8332
AT5G17560 BolA-like family protein (.1) Lus10020347
[exp]
3.6 0.8352
AT3G14310 ATPME3 pectin methylesterase 3 (.1) Lus10013344
[exp]
4.9 0.8080
AT3G06130 Heavy metal transport/detoxifi... Lus10021941
[exp]
8.5 0.8274
AT4G15930 Dynein light chain type 1 fami... Lus10037494
[exp]
8.8 0.8181
AT5G60750 CAAX amino terminal protease f... Lus10028751
[exp]
10.5 0.7825
AT4G16650 O-fucosyltransferase family pr... Lus10004729
[exp]
11.0 0.8028
AT3G25500 AHF1, AFH1, ATF... ARABIDOPSIS THALIANA FORMIN HO... Lus10002149
[exp]
12.8 0.8187
AT3G06130 Heavy metal transport/detoxifi... Lus10041228
[exp]
15.0 0.8068
AT4G23820 Pectin lyase-like superfamily ... Lus10032374
[exp]
17.0 0.7902

Lus10033414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.