Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70370 674 / 0 PG2 polygalacturonase 2 (.1.2) AT1G23760 651 / 0 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1) AT1G60390 605 / 0 PG1 polygalacturonase 1 (.1) AT5G25610 110 / 4e-26 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 102 / 7e-24 ATUSPL1 unknown seed protein like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034881 [exp] 1123 / 0 AT1G70370 682 / 0.0 polygalacturonase 2 (.1.2) Lus10013009 [exp] 659 / 0 AT1G70370 834 / 0.0 polygalacturonase 2 (.1.2) Lus10029156 [exp] 653 / 0 AT1G70370 820 / 0.0 polygalacturonase 2 (.1.2) Lus10022114 [exp] 135 / 2e-34 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007674 [exp] 133 / 1e-33 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10026333 [exp] 124 / 3e-32 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10003263 [exp] 118 / 4e-29 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10032324 [exp] 115 / 1e-28 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10007011 [exp] 115 / 2e-28 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079200 [exp] 818 / 0 AT1G70370 747 / 0.0 polygalacturonase 2 (.1.2) Potri.010G040800 [exp] 647 / 0 AT1G70370 819 / 0.0 polygalacturonase 2 (.1.2) Potri.008G190000 [exp] 640 / 0 AT1G70370 841 / 0.0 polygalacturonase 2 (.1.2) Potri.006G243700 [exp] 130 / 5e-33 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 130 / 1e-32 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.018G036700 [exp] 129 / 4e-32 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 125 / 3e-31 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 122 / 1e-30 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 122 / 2e-30 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 121 / 5e-30 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [flax] [poplar] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Lus10033417 pacid=23172104 polypeptide=Lus10033417 locus=Lus10033417.g ID=Lus10033417.BGIv1.0 annot-version=v1.0 ATGATCAACAATCCGTTTTCCCCCAAGGCAGCATCCATCCGTTACTGGAACAACCGAGTCTCCTCCGCCCTCCCCATATCTCACTTCCTTCTCTCCAAAG CCTCACCGCTCACCGCCTCCCAATCGGCCTTCCTCACCAAACTCGCCTCCCAAAACTCCCTCTCCTCCCACTTCAACTCCTTCTGTTCCTTGGCCAACTT ATTCTGCTCCTTCGACTCTGCCACCTCCTCCTCTCCTGCAAACTTCGCTCTCTACACATCCAACCGCCGCTTCTCCAACTACGGCACCGCCGGAGCCGGA CTACTCGACTCCTTCAAAAACTACTCCACCGGGATCAACTCTGCCTCCGACTCCTTCCTCAAATACAGCCCCCGCTCAAATCGCCACAACGAACTATTCG CAAACTACGCCGTTGACGCCAACGTCGCCAATGCCACCTTCGGAAACTACGGATCCGGCGCCACCGGCGGCGTCGGCGATTTCCAAAACTACCAGGATCG AGTCAACGTTCCTGGTCAACGATTCACTACCTACGACTCCGGCAGCAAGACCCACAAACGCTCTTTCACTAGTTACAGCGAGGATACTAACGCCGGCTCA CAGTCCTTCATTAGCTACGCCAAGAAAGGGAATCGTTCGCCCGATCAGTTCACCAGCTACGCCCAAGGATCGAATACCGTCGATTCTAGGTTTACAGGGT ACGGCGAGCTGAGTCAAGGAGCCAACGACTCGTTCACGGGTTACGGAAACGCGGCGAACAATCCGCATAACGATTTCAAGAGTTACGGAACCGGCGGAGC TTCCGCGGCGGAAACATTTTCGAATTATAGAGACGCGGCTAATGTCGGCGAGGATACGTTTCAATCTTACGTCCAGAATTCCAATTCCGGCAGCAGAGTG AGTTTCACCAACTATGGGAAAACGTTCAATCCTGGCAACGACACCTTTAAAGAGTACGGGAAAGGTTCGAAAGGAGCTACCACCGTTGGATTCCAAAGCT ACAGTTCTGATCGGACGTTCCAAGACTATAGCAAAAAAGGTGTCACTTTCTCGTCCTACAATAAAGCAACTGGGTCCCACTCCCAAACACATGCTGTTGC TGACGGTGTTTCTGTAAATAAGAGGAAAGTAGAGGCCAGTAGGTTCTTCAGGGAGTCTATGTTGAGGGAAGGGAATGTAATGGTGATGCCCGACATTGTT GACAGAATGCCTGAAAGGTCATTTTTACCCCGCGCGATTGTGTCCAGATTACCATTCTCGTCATCGCGGCTGGAGGAGGTGAAGGATATTTTCCACGCAG GGGAGAACTCGACGGCGGCGATAGTGATCGAGAACGCGGTAGCGGAGTGCGAGAGAGCTCCTAGCGCCGGGGAGACAAAGAGGTGTGTGGGGTCGATAGA GGATATGATTGACTTTGCGGTCACTGTGTTAGGGGCCGACGTGGTGGTGAGGACAACGGAGAATGTGAAGGGGTCAAAGGAGGAGGTGATGATCGGGGCA GTCAAAGGGATCGACGGTGGGAGAGTGACTGAATCAGTGTCGTGTCATCAGAGTTTGTACCCGTATTTGCTATATTATTGCCACTCTGTCCCAAAAGTGA GGGTATACGAGGCTGACATTGTGGAAGTGGAGAGCAGAAGGAAAATCAATGTCGGCGTGGCTATATGTCACATGGACACGTCAGAATGGAGCTCGGATCA TGGAGCTTTCGTGGCTTTGGGTTACGGTCCAGGTCTAATCGAGATTTGCCACTGGATATTTGAAAACGACATGACTTGGACGGTTGCCGATTCAGATTGA
AA sequence Show only first row Show all	>Lus10033417 pacid=23172104 polypeptide=Lus10033417 locus=Lus10033417.g ID=Lus10033417.BGIv1.0 annot-version=v1.0 MINNPFSPKAASIRYWNNRVSSALPISHFLLSKASPLTASQSAFLTKLASQNSLSSHFNSFCSLANLFCSFDSATSSSPANFALYTSNRRFSNYGTAGAG LLDSFKNYSTGINSASDSFLKYSPRSNRHNELFANYAVDANVANATFGNYGSGATGGVGDFQNYQDRVNVPGQRFTTYDSGSKTHKRSFTSYSEDTNAGS QSFISYAKKGNRSPDQFTSYAQGSNTVDSRFTGYGELSQGANDSFTGYGNAANNPHNDFKSYGTGGASAAETFSNYRDAANVGEDTFQSYVQNSNSGSRV SFTNYGKTFNPGNDTFKEYGKGSKGATTVGFQSYSSDRTFQDYSKKGVTFSSYNKATGSHSQTHAVADGVSVNKRKVEASRFFRESMLREGNVMVMPDIV DRMPERSFLPRAIVSRLPFSSSRLEEVKDIFHAGENSTAAIVIENAVAECERAPSAGETKRCVGSIEDMIDFAVTVLGADVVVRTTENVKGSKEEVMIGA VKGIDGGRVTESVSCHQSLYPYLLYYCHSVPKVRVYEADIVEVESRRKINVGVAICHMDTSEWSSDHGAFVALGYGPGLIEICHWIFENDMTWTVADSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10033417 [exp]	0	1
AT1G63100	GRAS		GRAS family transcription fact...		Lus10029592 [exp]	2.2	0.9378
AT5G54970			unknown protein		Lus10043108 [exp]	5.5	0.9107
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10009836 [exp]	6.2	0.9224
AT4G28230			unknown protein		Lus10018539 [exp]	11.2	0.9025
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	13.1	0.9085
AT3G59670			unknown protein		Lus10008349 [exp]	15.3	0.8994
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	22.1	0.8987
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042585 [exp]	24.3	0.8754
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	24.4	0.8929
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	24.9	0.8963

Compare expression of checked genes

Lus10033417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.